Strain Fitness in Dechlorosoma suillum PS around Dsui_0221

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0220 and Dsui_0221 are separated by 142 nucleotidesDsui_0221 and Dsui_0222 are separated by 126 nucleotidesDsui_0222 and Dsui_0223 are separated by 7 nucleotides Dsui_0220: Dsui_0220 - 2-phosphoglycolate phosphatase, at 219,055 to 219,717 _0220 Dsui_0221: Dsui_0221 - ribulose-phosphate 3-epimerase, at 219,860 to 220,549 _0221 Dsui_0222: Dsui_0222 - uncharacterized protein affecting Mg2+/Co2+ transport, at 220,676 to 221,059 _0222 Dsui_0223: Dsui_0223 - methylase involved in ubiquinone/menaquinone biosynthesis, at 221,067 to 221,660 _0223 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2at 218.976 kb on - strandat 218.976 kb on - strandat 219.129 kb on - strand, within Dsui_0220at 219.153 kb on - strand, within Dsui_0220at 219.264 kb on - strand, within Dsui_0220at 219.270 kb on - strand, within Dsui_0220at 219.283 kb on - strand, within Dsui_0220at 219.299 kb on - strand, within Dsui_0220at 219.339 kb on - strand, within Dsui_0220at 219.344 kb on - strand, within Dsui_0220at 219.368 kb on - strand, within Dsui_0220at 219.369 kb on - strand, within Dsui_0220at 219.369 kb on - strand, within Dsui_0220at 219.383 kb on - strand, within Dsui_0220at 219.400 kb on - strand, within Dsui_0220at 219.428 kb on - strand, within Dsui_0220at 219.446 kb on - strand, within Dsui_0220at 219.529 kb on - strand, within Dsui_0220at 219.595 kb on + strand, within Dsui_0220at 219.603 kb on - strand, within Dsui_0220at 219.623 kb on + strand, within Dsui_0220at 219.708 kb on + strandat 219.762 kb on - strandat 219.772 kb on + strandat 220.619 kb on + strandat 220.628 kb on + strandat 220.651 kb on - strandat 220.660 kb on + strandat 220.667 kb on + strandat 220.667 kb on + strandat 220.667 kb on + strandat 220.668 kb on - strandat 220.731 kb on - strand, within Dsui_0222at 220.782 kb on - strand, within Dsui_0222at 220.865 kb on + strand, within Dsui_0222at 220.977 kb on + strand, within Dsui_0222at 221.013 kb on - strand, within Dsui_0222at 221.083 kb on + strandat 221.091 kb on - strandat 221.096 kb on - strandat 221.165 kb on + strand, within Dsui_0223at 221.368 kb on + strand, within Dsui_0223at 221.384 kb on + strand, within Dsui_0223at 221.411 kb on + strand, within Dsui_0223at 221.431 kb on + strand, within Dsui_0223at 221.499 kb on + strand, within Dsui_0223at 221.520 kb on + strand, within Dsui_0223

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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218,976 - +0.4
218,976 - +0.4
219,129 - Dsui_0220 0.11 +2.7
219,153 - Dsui_0220 0.15 +0.9
219,264 - Dsui_0220 0.32 +1.4
219,270 - Dsui_0220 0.32 -0.1
219,283 - Dsui_0220 0.34 +1.0
219,299 - Dsui_0220 0.37 -0.8
219,339 - Dsui_0220 0.43 +1.9
219,344 - Dsui_0220 0.44 +0.8
219,368 - Dsui_0220 0.47 +1.5
219,369 - Dsui_0220 0.47 +1.1
219,369 - Dsui_0220 0.47 +1.2
219,383 - Dsui_0220 0.49 +1.6
219,400 - Dsui_0220 0.52 +1.0
219,428 - Dsui_0220 0.56 +1.0
219,446 - Dsui_0220 0.59 +0.7
219,529 - Dsui_0220 0.71 +0.9
219,595 + Dsui_0220 0.81 +1.3
219,603 - Dsui_0220 0.83 +1.2
219,623 + Dsui_0220 0.86 +0.3
219,708 + +0.6
219,762 - +0.1
219,772 + -0.4
220,619 + -0.3
220,628 + +1.4
220,651 - +0.1
220,660 + +0.0
220,667 + -0.1
220,667 + -0.3
220,667 + +0.6
220,668 - -0.3
220,731 - Dsui_0222 0.14 +1.3
220,782 - Dsui_0222 0.28 -0.5
220,865 + Dsui_0222 0.49 -0.5
220,977 + Dsui_0222 0.78 -2.5
221,013 - Dsui_0222 0.88 -0.0
221,083 + -0.2
221,091 - +0.8
221,096 - -0.1
221,165 + Dsui_0223 0.16 +0.5
221,368 + Dsui_0223 0.51 -0.9
221,384 + Dsui_0223 0.53 -0.4
221,411 + Dsui_0223 0.58 -1.4
221,431 + Dsui_0223 0.61 -0.7
221,499 + Dsui_0223 0.73 -1.7
221,520 + Dsui_0223 0.76 -0.6

Or see this region's nucleotide sequence