Strain Fitness in Dechlorosoma suillum PS around Dsui_0051

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0050 and Dsui_0051 are separated by 198 nucleotidesDsui_0051 and Dsui_0052 are separated by 308 nucleotides Dsui_0050: Dsui_0050 - fructose-bisphosphate aldolase, class II, Calvin cycle subtype, at 47,046 to 48,110 _0050 Dsui_0051: Dsui_0051 - cob(II)yrinic acid a,c-diamide reductase, at 48,309 to 49,079 _0051 Dsui_0052: Dsui_0052 - pyruvate kinase, at 49,388 to 50,833 _0052 Position (kb) 48 49 50Strain fitness (log2 ratio) -1 0 1at 48.147 kb on - strandat 48.152 kb on - strandat 48.169 kb on - strandat 48.207 kb on - strandat 48.212 kb on + strandat 48.219 kb on + strandat 48.252 kb on + strandat 48.258 kb on + strandat 48.339 kb on - strandat 48.344 kb on - strandat 48.368 kb on - strandat 48.539 kb on + strand, within Dsui_0051at 48.580 kb on - strand, within Dsui_0051at 48.643 kb on + strand, within Dsui_0051at 48.727 kb on - strand, within Dsui_0051at 48.743 kb on + strand, within Dsui_0051at 48.777 kb on - strand, within Dsui_0051at 48.811 kb on - strand, within Dsui_0051at 48.867 kb on - strand, within Dsui_0051at 49.006 kb on + strandat 49.160 kb on + strandat 49.168 kb on - strandat 49.173 kb on - strandat 49.212 kb on + strandat 49.367 kb on - strandat 49.380 kb on + strandat 49.389 kb on - strandat 49.529 kb on + strandat 49.583 kb on - strand, within Dsui_0052at 49.733 kb on - strand, within Dsui_0052at 49.774 kb on + strand, within Dsui_0052at 49.842 kb on + strand, within Dsui_0052at 49.855 kb on - strand, within Dsui_0052at 49.931 kb on - strand, within Dsui_0052at 49.964 kb on - strand, within Dsui_0052at 50.000 kb on + strand, within Dsui_0052at 50.027 kb on + strand, within Dsui_0052

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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48,147 - +0.3
48,152 - -0.0
48,169 - +0.7
48,207 - +0.6
48,212 + +0.9
48,219 + -0.1
48,252 + -0.3
48,258 + -0.0
48,339 - +1.2
48,344 - +0.1
48,368 - -1.1
48,539 + Dsui_0051 0.30 -0.0
48,580 - Dsui_0051 0.35 -0.3
48,643 + Dsui_0051 0.43 +0.7
48,727 - Dsui_0051 0.54 -0.2
48,743 + Dsui_0051 0.56 +1.3
48,777 - Dsui_0051 0.61 +0.7
48,811 - Dsui_0051 0.65 +0.6
48,867 - Dsui_0051 0.72 +0.4
49,006 + +1.2
49,160 + +0.8
49,168 - +0.4
49,173 - +0.3
49,212 + +0.9
49,367 - +0.6
49,380 + +0.1
49,389 - +0.6
49,529 + +1.0
49,583 - Dsui_0052 0.13 +1.0
49,733 - Dsui_0052 0.24 +0.3
49,774 + Dsui_0052 0.27 +0.2
49,842 + Dsui_0052 0.31 +0.1
49,855 - Dsui_0052 0.32 -0.9
49,931 - Dsui_0052 0.38 +1.1
49,964 - Dsui_0052 0.40 +0.9
50,000 + Dsui_0052 0.42 -0.6
50,027 + Dsui_0052 0.44 +0.8

Or see this region's nucleotide sequence