Strain Fitness in Dechlorosoma suillum PS around Dsui_0038

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0037 and Dsui_0038 are separated by 85 nucleotidesDsui_0038 and Dsui_0039 are separated by 102 nucleotides Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840 _0037 Dsui_0038: Dsui_0038 - HIT family hydrolase, diadenosine tetraphosphate hydrolase, at 34,926 to 35,336 _0038 Dsui_0039: Dsui_0039 - dimethyladenosine transferase, at 35,439 to 36,215 _0039 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 33.930 kb on - strand, within Dsui_0037at 33.962 kb on - strand, within Dsui_0037at 34.171 kb on - strand, within Dsui_0037at 34.182 kb on + strand, within Dsui_0037at 34.190 kb on + strand, within Dsui_0037at 34.225 kb on - strand, within Dsui_0037at 34.225 kb on - strand, within Dsui_0037at 34.237 kb on - strand, within Dsui_0037at 34.238 kb on - strand, within Dsui_0037at 34.242 kb on + strand, within Dsui_0037at 34.275 kb on + strand, within Dsui_0037at 34.297 kb on + strand, within Dsui_0037at 34.306 kb on - strandat 34.428 kb on + strand, within Dsui_0037at 34.436 kb on - strand, within Dsui_0037at 34.461 kb on - strand, within Dsui_0037at 34.476 kb on - strand, within Dsui_0037at 34.482 kb on - strand, within Dsui_0037at 34.611 kb on + strandat 34.721 kb on - strandat 34.761 kb on - strandat 34.810 kb on - strandat 34.860 kb on - strandat 34.876 kb on + strandat 34.890 kb on + strandat 34.890 kb on + strandat 34.890 kb on + strandat 34.890 kb on + strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.923 kb on + strandat 34.923 kb on + strandat 34.931 kb on - strandat 34.972 kb on + strand, within Dsui_0038at 34.972 kb on + strand, within Dsui_0038at 35.019 kb on + strand, within Dsui_0038at 35.027 kb on - strandat 35.139 kb on + strand, within Dsui_0038at 35.149 kb on + strand, within Dsui_0038at 35.155 kb on + strand, within Dsui_0038at 35.259 kb on + strand, within Dsui_0038at 35.413 kb on - strandat 35.466 kb on + strandat 35.554 kb on + strand, within Dsui_0039at 35.714 kb on + strand, within Dsui_0039at 35.794 kb on + strand, within Dsui_0039at 35.802 kb on + strand, within Dsui_0039at 35.971 kb on + strand, within Dsui_0039at 36.088 kb on + strand, within Dsui_0039at 36.096 kb on - strandat 36.186 kb on + strandat 36.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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33,930 - Dsui_0037 0.25 +1.1
33,962 - Dsui_0037 0.27 -0.2
34,171 - Dsui_0037 0.45 -0.3
34,182 + Dsui_0037 0.46 +0.1
34,190 + Dsui_0037 0.46 +0.2
34,225 - Dsui_0037 0.49 +0.6
34,225 - Dsui_0037 0.49 -0.7
34,237 - Dsui_0037 0.50 +1.6
34,238 - Dsui_0037 0.50 -0.5
34,242 + Dsui_0037 0.51 -0.7
34,275 + Dsui_0037 0.53 -0.1
34,297 + Dsui_0037 0.55 +0.2
34,306 - +1.0
34,428 + Dsui_0037 0.66 +1.0
34,436 - Dsui_0037 0.67 -0.1
34,461 - Dsui_0037 0.69 -1.6
34,476 - Dsui_0037 0.70 -0.2
34,482 - Dsui_0037 0.70 +0.3
34,611 + +0.4
34,721 - -1.5
34,761 - +0.7
34,810 - -0.2
34,860 - +0.0
34,876 + -2.1
34,890 + -0.3
34,890 + -0.4
34,890 + +1.0
34,890 + -0.3
34,898 - +2.0
34,898 - +0.2
34,898 - -1.5
34,898 - -1.4
34,898 - +2.0
34,898 - -0.3
34,923 + -1.1
34,923 + -1.0
34,931 - -0.6
34,972 + Dsui_0038 0.11 -1.3
34,972 + Dsui_0038 0.11 -1.1
35,019 + Dsui_0038 0.23 -0.9
35,027 - +0.7
35,139 + Dsui_0038 0.52 -1.1
35,149 + Dsui_0038 0.54 -0.7
35,155 + Dsui_0038 0.56 -1.2
35,259 + Dsui_0038 0.81 -0.6
35,413 - -0.8
35,466 + -1.5
35,554 + Dsui_0039 0.15 -0.3
35,714 + Dsui_0039 0.35 -0.8
35,794 + Dsui_0039 0.46 -1.1
35,802 + Dsui_0039 0.47 -1.5
35,971 + Dsui_0039 0.68 +0.2
36,088 + Dsui_0039 0.84 -0.6
36,096 - +2.0
36,186 + +0.7
36,193 - -0.3

Or see this region's nucleotide sequence