Strain Fitness in Shewanella amazonensis SB2B around Sama_3046

Experiment: Uridine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine
3,623,439	+		Sama_3044	0.80	-3.2
3,623,439	+		Sama_3044	0.80	-1.5
3,623,499	+				-0.2
3,623,540	+				-3.4
3,623,540	+				-2.0
3,623,541	-				-2.7
3,623,542	+				-4.0
3,623,542	+				-2.4
3,623,542	+				-3.0
3,623,552	+				-2.5
3,623,552	+				-2.7
3,623,552	+				-2.7
3,623,552	+				-0.6
3,623,552	+				-1.3
3,623,552	+				-3.2
3,623,552	+				-2.3
3,623,552	+				-3.3
3,623,552	+				-0.0
3,623,552	+				-1.3
3,623,552	+				-0.7
3,623,552	+				-0.6
3,623,552	+				-0.5
3,623,552	+				-2.7
3,623,552	+				-1.4
3,623,552	+				-2.5
3,623,553	-				+0.2
3,623,553	-				-0.4
3,623,553	-				-0.7
3,623,553	-				+0.1
3,623,553	-				+0.7
3,623,553	-				+0.3
3,623,553	-				+0.7
3,623,553	-				+0.4
3,623,553	-				+0.2
3,623,553	-				+0.4
3,623,553	-				-0.6
3,623,553	-				-2.3
3,623,553	-				+0.6
3,623,553	-				-0.5
3,623,553	-				+1.3
3,623,553	-				+0.3
3,623,553	-				+1.5
3,623,553	-				+0.3
3,623,553	-				-0.7
3,623,553	-				+1.6
3,623,553	-				+0.3
3,623,553	-				+0.2
3,623,643	+				-1.5
3,623,644	-				-0.9
3,623,712	-		Sama_3045	0.16	-1.2
3,623,712	-		Sama_3045	0.16	-1.5
3,623,743	-		Sama_3045	0.19	-1.5
3,623,764	+		Sama_3045	0.22	+0.6
3,623,786	+		Sama_3045	0.24	-0.7
3,623,787	-		Sama_3045	0.25	-0.2
3,623,787	-		Sama_3045	0.25	-1.5
3,623,925	+		Sama_3045	0.41	-0.3
3,623,946	+		Sama_3045	0.43	-2.6
3,623,946	+		Sama_3045	0.43	-2.9
3,623,946	+		Sama_3045	0.43	+0.8
3,623,947	-		Sama_3045	0.44	-1.2
3,623,947	-		Sama_3045	0.44	-0.7
3,624,051	+		Sama_3045	0.56	-1.7
3,624,105	+		Sama_3045	0.62	-1.7
3,624,105	+		Sama_3045	0.62	-0.2
3,624,106	-		Sama_3045	0.62	-1.7
3,624,213	-		Sama_3045	0.75	-2.0
3,624,277	-		Sama_3045	0.83	-0.2
3,624,344	-				-2.6
3,624,421	+				+0.3
3,624,422	-				-0.2
3,624,422	-				+0.0
3,624,422	-				+1.2
3,624,422	-				+0.5
3,624,427	+				+0.6
3,624,438	-				-0.3
3,624,479	-		Sama_3046	0.10	-0.1
3,624,479	-		Sama_3046	0.10	-0.5
3,624,525	-		Sama_3046	0.21	-1.8
3,624,525	-		Sama_3046	0.21	-0.4
3,624,549	-		Sama_3046	0.27	-0.6
3,624,549	-		Sama_3046	0.27	-0.6
3,624,549	-		Sama_3046	0.27	-0.5
3,624,549	-		Sama_3046	0.27	-1.9
3,624,600	+		Sama_3046	0.39	-0.0
3,624,600	+		Sama_3046	0.39	+1.4
3,624,601	-		Sama_3046	0.39	-1.4
3,624,612	-		Sama_3046	0.42	-0.2
3,624,612	-		Sama_3046	0.42	-1.5
3,624,625	+		Sama_3046	0.45	-0.8
3,624,626	-		Sama_3046	0.45	-1.2
3,624,626	-		Sama_3046	0.45	-0.7
3,624,626	-		Sama_3046	0.45	-0.4
3,624,626	-		Sama_3046	0.45	-0.7
3,624,630	+		Sama_3046	0.46	+0.2
3,624,630	+		Sama_3046	0.46	-0.9
3,624,630	+		Sama_3046	0.46	+2.0
3,624,631	-		Sama_3046	0.46	-1.3
3,624,631	-		Sama_3046	0.46	+0.3
3,624,690	-		Sama_3046	0.60	-0.4
3,624,696	+		Sama_3046	0.62	-1.2
3,624,717	+		Sama_3046	0.67	-0.5
3,624,776	-		Sama_3046	0.81	+1.2
3,624,797	+		Sama_3046	0.86	+0.3
3,624,797	+		Sama_3046	0.86	-0.4
3,624,798	-		Sama_3046	0.86	-0.2
3,624,798	-		Sama_3046	0.86	-0.0
3,624,890	+				+0.0
3,624,890	+				+0.6
3,624,890	+				+0.2
3,624,890	+				+0.9
3,624,890	+				-0.2
3,624,890	+				+0.4
3,624,890	+				+0.0
3,624,891	-				-0.2
3,624,891	-				+1.7
3,624,891	-				+0.4
3,624,891	-				+0.3
3,624,891	-				-0.7
3,624,891	-				+1.4
3,624,891	-				-0.2
3,624,891	-				-2.2
3,624,891	-				+0.2
3,624,891	-				+1.4
3,624,891	-				-0.7
3,624,900	+				-0.1
3,624,938	+		Sama_3047	0.12	+1.9
3,624,939	-		Sama_3047	0.12	+0.6
3,624,967	+		Sama_3047	0.16	-0.3
3,624,968	-		Sama_3047	0.16	-2.3
3,624,968	-		Sama_3047	0.16	-1.0
3,625,001	+		Sama_3047	0.22	+0.5
3,625,001	+		Sama_3047	0.22	+0.4
3,625,001	+		Sama_3047	0.22	-0.1
3,625,002	-		Sama_3047	0.22	+0.1
3,625,072	+		Sama_3047	0.33	+0.5
3,625,109	-		Sama_3047	0.39	-1.1
3,625,109	-		Sama_3047	0.39	-0.7
3,625,109	-		Sama_3047	0.39	+0.9
3,625,109	-		Sama_3047	0.39	-0.1
3,625,109	-		Sama_3047	0.39	-0.1
3,625,109	-		Sama_3047	0.39	+0.0
3,625,109	-		Sama_3047	0.39	-0.2
3,625,139	+		Sama_3047	0.44	+2.2
3,625,139	+		Sama_3047	0.44	+0.6
3,625,139	+		Sama_3047	0.44	+0.3
3,625,139	+		Sama_3047	0.44	+0.3
3,625,140	-		Sama_3047	0.44	+1.1
3,625,140	-		Sama_3047	0.44	-0.1
3,625,140	-		Sama_3047	0.44	-0.4
3,625,158	+		Sama_3047	0.47	+0.9
3,625,158	+		Sama_3047	0.47	+1.0
3,625,158	+		Sama_3047	0.47	-0.2
3,625,303	+		Sama_3047	0.71	+0.3
3,625,304	-		Sama_3047	0.71	-0.6
3,625,397	-		Sama_3047	0.86	+0.2
3,625,397	-		Sama_3047	0.86	+0.5
3,625,424	-				-1.0
3,625,424	-				+0.6
3,625,424	-				-0.1
3,625,443	+				+0.5
3,625,444	-				+0.0
3,625,444	-				-0.4
3,625,444	-				+1.9
3,625,476	-				-1.6
3,625,510	+				-0.6
3,625,510	+				-0.1
3,625,510	+				+0.1
3,625,511	-				-0.2
3,625,511	-				-0.4
3,625,511	-				-0.4
3,625,511	-				-3.7
3,625,511	-				-0.7
3,625,511	-				-0.5
3,625,511	-				-0.7
3,625,511	-				-1.1
3,625,511	-				-0.7
3,625,513	+				-0.6
3,625,514	-				+0.5
3,625,514	-				-1.3
3,625,514	-				+0.9
3,625,514	-				-1.5
3,625,537	+				+0.4
3,625,538	-				-1.1
3,625,542	+				-0.3
3,625,610	+				-1.1
3,625,651	+				+1.6
3,625,651	+				+0.9
3,625,652	-				+0.9
3,625,653	+				+1.4
3,625,653	+				+0.9
3,625,661	+				+0.4
3,625,678	+				-1.1
3,625,678	+				+0.6
3,625,678	+				+1.0
3,625,678	+				+0.1
3,625,678	+				-1.1
3,625,678	+				-0.7
3,625,679	-				+0.4