Strain Fitness in Shewanella amazonensis SB2B around Sama_0898

Experiment: Uridine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine
1,085,147	+		Sama_0896	0.64	+1.0
1,085,147	+		Sama_0896	0.64	+1.4
1,085,147	+		Sama_0896	0.64	-0.2
1,085,147	+		Sama_0896	0.64	+0.4
1,085,147	+		Sama_0896	0.64	+0.3
1,085,147	+		Sama_0896	0.64	-0.1
1,085,147	+		Sama_0896	0.64	-0.5
1,085,147	+		Sama_0896	0.64	+0.8
1,085,147	+		Sama_0896	0.64	+0.5
1,085,147	+		Sama_0896	0.64	+0.7
1,085,147	+		Sama_0896	0.64	+0.5
1,085,147	+		Sama_0896	0.64	+0.7
1,085,147	+		Sama_0896	0.64	+0.2
1,085,147	+		Sama_0896	0.64	+2.3
1,085,147	+		Sama_0896	0.64	+0.4
1,085,147	+		Sama_0896	0.64	-0.8
1,085,147	+		Sama_0896	0.64	+1.0
1,085,147	+		Sama_0896	0.64	-1.7
1,085,147	+		Sama_0896	0.64	-0.3
1,085,147	+		Sama_0896	0.64	-0.8
1,085,147	+		Sama_0896	0.64	+0.3
1,085,147	+		Sama_0896	0.64	+1.1
1,085,147	+		Sama_0896	0.64	+0.2
1,085,148	-		Sama_0896	0.64	+0.9
1,085,148	-		Sama_0896	0.64	-0.3
1,085,148	-		Sama_0896	0.64	+0.0
1,085,148	-		Sama_0896	0.64	+1.2
1,085,148	-		Sama_0896	0.64	+0.4
1,085,148	-		Sama_0896	0.64	-0.1
1,085,148	-		Sama_0896	0.64	+0.4
1,085,148	-		Sama_0896	0.64	-1.0
1,085,148	-		Sama_0896	0.64	-0.0
1,085,148	-		Sama_0896	0.64	+1.2
1,085,148	-		Sama_0896	0.64	+1.7
1,085,148	-		Sama_0896	0.64	+1.2
1,085,148	-		Sama_0896	0.64	+0.8
1,085,148	-		Sama_0896	0.64	+0.1
1,085,148	-		Sama_0896	0.64	-0.2
1,085,148	-		Sama_0896	0.64	+0.6
1,085,168	+		Sama_0896	0.66	-0.9
1,085,168	+		Sama_0896	0.66	+0.7
1,085,168	+		Sama_0896	0.66	+0.1
1,085,168	+		Sama_0896	0.66	+0.2
1,085,168	+		Sama_0896	0.66	+1.3
1,085,168	+		Sama_0896	0.66	-0.6
1,085,169	-		Sama_0896	0.66	+1.0
1,085,169	-		Sama_0896	0.66	-0.0
1,085,170	+		Sama_0896	0.66	+0.2
1,085,170	+		Sama_0896	0.66	+0.1
1,085,170	+		Sama_0896	0.66	-0.2
1,085,171	-		Sama_0896	0.66	-2.3
1,085,182	-		Sama_0896	0.67	-0.6
1,085,281	+		Sama_0896	0.77	-1.2
1,085,281	+		Sama_0896	0.77	-0.5
1,085,299	+		Sama_0896	0.78	+0.8
1,085,299	+		Sama_0896	0.78	+0.1
1,085,299	+		Sama_0896	0.78	-1.1
1,085,299	+		Sama_0896	0.78	-0.4
1,085,299	+		Sama_0896	0.78	+0.3
1,085,300	-		Sama_0896	0.78	-0.3
1,085,353	+		Sama_0896	0.83	+0.4
1,085,354	-		Sama_0896	0.83	+0.7
1,085,358	+		Sama_0896	0.84	+0.2
1,085,358	+		Sama_0896	0.84	+0.1
1,085,358	+		Sama_0896	0.84	+0.7
1,085,359	-		Sama_0896	0.84	+1.3
1,085,359	-		Sama_0896	0.84	+0.5
1,085,359	-		Sama_0896	0.84	+0.2
1,085,359	-		Sama_0896	0.84	+0.2
1,085,401	+		Sama_0896	0.88	-0.7
1,085,476	+				+0.8
1,085,477	-				+0.7
1,085,477	-				+1.7
1,085,477	-				-0.6
1,085,528	+				+0.7
1,085,528	+				-0.3
1,085,537	+				+0.1
1,085,537	+				-0.2
1,085,548	+				+0.2
1,085,548	+				+0.7
1,085,549	-				-1.1
1,085,598	+				+1.1
1,085,598	+				+0.0
1,085,604	+				-0.8
1,085,725	+		Sama_0897	0.13	-1.9
1,085,725	+		Sama_0897	0.13	+0.7
1,085,738	+		Sama_0897	0.16	+1.1
1,085,819	-		Sama_0897	0.38	+0.5
1,085,845	+		Sama_0897	0.45	-0.3
1,085,845	+		Sama_0897	0.45	+0.3
1,085,845	+		Sama_0897	0.45	-0.4
1,085,846	-		Sama_0897	0.45	+1.4
1,085,874	+		Sama_0897	0.52	+0.8
1,085,898	-		Sama_0897	0.59	+1.4
1,085,898	-		Sama_0897	0.59	-0.0
1,086,005	-		Sama_0897	0.87	+1.3
1,086,005	-		Sama_0897	0.87	-0.6
1,086,040	+				+0.4
1,086,040	+				-0.0
1,086,040	+				-0.6
1,086,040	+				-0.9
1,086,050	+				-0.2
1,086,114	+				-0.1
1,086,114	+				+0.0
1,086,115	-				-0.6
1,086,115	-				+0.5
1,086,115	-				-0.4
1,086,115	-				+0.8
1,086,118	-				-0.3
1,086,124	+				-0.1
1,086,157	+				-3.5
1,086,158	-				-1.6
1,086,262	-				-3.1
1,086,265	+				-3.0
1,086,265	+				-3.4
1,086,265	+				-3.0
1,086,265	+				-2.0
1,086,265	+				-4.6
1,086,265	+				-3.1
1,086,265	+				-4.1
1,086,266	-				-1.9
1,086,266	-				-3.8
1,086,266	-				-4.5
1,086,266	-				-2.4
1,086,266	-				-3.3
1,086,266	-				-3.9
1,086,266	-				+0.8
1,086,266	-				-0.6
1,086,266	-				-3.1
1,086,325	-		Sama_0898	0.10	-1.6
1,086,325	-		Sama_0898	0.10	-2.1
1,086,354	-		Sama_0898	0.12	-1.6
1,086,441	-		Sama_0898	0.16	-3.0
1,086,452	+		Sama_0898	0.17	-4.3
1,086,452	+		Sama_0898	0.17	-2.6
1,086,452	+		Sama_0898	0.17	-2.3
1,086,453	-		Sama_0898	0.17	-1.6
1,086,453	-		Sama_0898	0.17	-4.2
1,086,453	-		Sama_0898	0.17	-3.8
1,086,453	-		Sama_0898	0.17	-3.1
1,086,474	+		Sama_0898	0.18	-1.8
1,086,474	+		Sama_0898	0.18	-1.8
1,086,475	-		Sama_0898	0.18	-2.7
1,086,475	-		Sama_0898	0.18	-2.8
1,086,475	-		Sama_0898	0.18	-1.1
1,086,475	-		Sama_0898	0.18	-2.5
1,086,485	+		Sama_0898	0.18	-4.3
1,086,485	+		Sama_0898	0.18	-2.8
1,086,485	+		Sama_0898	0.18	-2.3
1,086,486	-		Sama_0898	0.18	-1.1
1,086,540	-		Sama_0898	0.21	-3.4
1,086,709	-		Sama_0898	0.30	-2.5
1,086,716	+		Sama_0898	0.30	-1.3
1,086,743	+		Sama_0898	0.31	-3.1
1,086,743	+		Sama_0898	0.31	-1.9
1,086,743	+		Sama_0898	0.31	-3.0
1,086,743	+		Sama_0898	0.31	-3.8
1,086,750	+		Sama_0898	0.32	-3.1
1,086,751	-		Sama_0898	0.32	-3.4
1,086,751	-		Sama_0898	0.32	-1.9
1,086,810	+		Sama_0898	0.35	-4.1
1,086,810	+		Sama_0898	0.35	-2.5
1,086,810	+		Sama_0898	0.35	-3.8
1,086,811	-		Sama_0898	0.35	-2.8
1,086,832	+		Sama_0898	0.36	-2.0
1,086,945	+		Sama_0898	0.42	-2.3
1,086,946	-		Sama_0898	0.42	-2.3
1,086,960	+		Sama_0898	0.42	-2.8
1,086,960	+		Sama_0898	0.42	-2.3
1,086,961	-		Sama_0898	0.42	-2.5
1,086,961	-		Sama_0898	0.42	-2.5
1,086,976	+		Sama_0898	0.43	-3.3
1,086,976	+		Sama_0898	0.43	-2.8
1,086,976	+		Sama_0898	0.43	-2.1
1,086,977	-		Sama_0898	0.43	-3.2
1,086,992	+		Sama_0898	0.44	-1.1
1,086,992	+		Sama_0898	0.44	-3.8
1,086,992	+		Sama_0898	0.44	-2.5
1,086,992	+		Sama_0898	0.44	-3.6
1,086,992	+		Sama_0898	0.44	-4.0
1,086,995	+		Sama_0898	0.44	-3.6
1,086,995	+		Sama_0898	0.44	-2.9
1,086,996	-		Sama_0898	0.44	-3.3
1,087,127	+		Sama_0898	0.51	-0.3
1,087,127	+		Sama_0898	0.51	-1.9
1,087,127	+		Sama_0898	0.51	-3.5
1,087,128	-		Sama_0898	0.51	-3.5
1,087,130	+		Sama_0898	0.51	-3.8
1,087,130	+		Sama_0898	0.51	-3.3
1,087,130	+		Sama_0898	0.51	-3.9
1,087,130	+		Sama_0898	0.51	-3.7
1,087,130	+		Sama_0898	0.51	-2.6
1,087,131	-		Sama_0898	0.51	-4.4
1,087,131	-		Sama_0898	0.51	-3.6
1,087,131	-		Sama_0898	0.51	-1.9
1,087,164	+		Sama_0898	0.53	-3.4
1,087,164	+		Sama_0898	0.53	-3.9
1,087,165	-		Sama_0898	0.53	-3.1
1,087,165	-		Sama_0898	0.53	-0.3
1,087,165	-		Sama_0898	0.53	-3.5
1,087,165	-		Sama_0898	0.53	-1.5
1,087,165	-		Sama_0898	0.53	-3.2
1,087,167	+		Sama_0898	0.53	-3.1
1,087,167	+		Sama_0898	0.53	-1.9
1,087,167	+		Sama_0898	0.53	-1.6
1,087,167	+		Sama_0898	0.53	-2.3
1,087,167	+		Sama_0898	0.53	-3.8
1,087,168	-		Sama_0898	0.53	-5.2
1,087,168	-		Sama_0898	0.53	-2.3
1,087,197	-		Sama_0898	0.54	-3.1
1,087,251	+		Sama_0898	0.57	-4.2
1,087,252	-		Sama_0898	0.57	-0.7
1,087,254	+		Sama_0898	0.57	-4.1
1,087,255	-		Sama_0898	0.57	-3.1
1,087,255	-		Sama_0898	0.57	-3.0
1,087,255	-		Sama_0898	0.57	-2.5
1,087,259	+		Sama_0898	0.57	-1.3
1,087,259	+		Sama_0898	0.57	-2.6
1,087,259	+		Sama_0898	0.57	-3.4
1,087,259	+		Sama_0898	0.57	-4.3
1,087,259	+		Sama_0898	0.57	-3.0
1,087,260	-		Sama_0898	0.57	-4.3
1,087,412	-		Sama_0898	0.65	-1.3
1,087,422	-		Sama_0898	0.66	-2.5
1,087,480	+		Sama_0898	0.69	-2.8
1,087,480	+		Sama_0898	0.69	-3.0
1,087,480	+		Sama_0898	0.69	-1.6
1,087,481	-		Sama_0898	0.69	-2.3
1,087,481	-		Sama_0898	0.69	-3.0
1,087,591	+		Sama_0898	0.74	-2.1
1,087,591	+		Sama_0898	0.74	-1.9
1,087,591	+		Sama_0898	0.74	-2.8
1,087,592	-		Sama_0898	0.74	-2.5
1,087,592	-		Sama_0898	0.74	-2.8
1,087,592	-		Sama_0898	0.74	-2.9
1,087,592	-		Sama_0898	0.74	-3.6
1,087,592	-		Sama_0898	0.74	-4.8
1,087,592	-		Sama_0898	0.74	-0.9
1,087,592	-		Sama_0898	0.74	-3.0
1,087,592	-		Sama_0898	0.74	-2.5
1,087,592	-		Sama_0898	0.74	+0.1
1,087,674	+		Sama_0898	0.78	-2.3
1,087,674	+		Sama_0898	0.78	-1.3
1,087,675	-		Sama_0898	0.78	+0.7
1,087,713	+		Sama_0898	0.80	-3.7
1,087,714	-		Sama_0898	0.80	-2.5
1,087,714	-		Sama_0898	0.80	-4.3
1,087,750	+		Sama_0898	0.82	-3.3
1,087,750	+		Sama_0898	0.82	-1.3
1,087,751	-		Sama_0898	0.82	-3.2
1,087,751	-		Sama_0898	0.82	-1.3
1,087,756	+		Sama_0898	0.82	-2.1
1,087,756	+		Sama_0898	0.82	-1.3
1,087,756	+		Sama_0898	0.82	-4.4
1,087,756	+		Sama_0898	0.82	-2.5
1,087,756	+		Sama_0898	0.82	-3.7
1,087,756	+		Sama_0898	0.82	-3.4
1,087,757	-		Sama_0898	0.83	-2.1
1,087,757	-		Sama_0898	0.83	-3.5
1,087,777	+		Sama_0898	0.84	-2.8
1,087,777	+		Sama_0898	0.84	-2.9
1,087,778	-		Sama_0898	0.84	-1.3
1,087,778	-		Sama_0898	0.84	-3.6
1,087,789	+		Sama_0898	0.84	-2.3
1,087,789	+		Sama_0898	0.84	-2.8
1,087,789	+		Sama_0898	0.84	-2.8
1,087,789	+		Sama_0898	0.84	-1.6
1,087,789	+		Sama_0898	0.84	-4.3
1,087,789	+		Sama_0898	0.84	-3.4
1,087,790	-		Sama_0898	0.84	-2.1
1,087,790	-		Sama_0898	0.84	-1.6
1,087,790	-		Sama_0898	0.84	-2.9
1,087,790	-		Sama_0898	0.84	-5.6
1,087,790	-		Sama_0898	0.84	-3.6
1,087,831	+		Sama_0898	0.86	-0.3
1,087,831	+		Sama_0898	0.86	-1.9
1,087,831	+		Sama_0898	0.86	-3.3
1,087,831	+		Sama_0898	0.86	-3.5
1,087,832	-		Sama_0898	0.86	-2.7
1,087,874	-		Sama_0898	0.88	-1.3
1,087,875	+		Sama_0898	0.88	-2.9
1,087,875	+		Sama_0898	0.88	-2.1
1,087,875	+		Sama_0898	0.88	-2.5
1,087,875	+		Sama_0898	0.88	-2.1
1,087,875	+		Sama_0898	0.88	-3.3
1,087,875	+		Sama_0898	0.88	-3.3
1,087,876	-		Sama_0898	0.89	-0.3
1,087,876	-		Sama_0898	0.89	-3.2
1,087,876	-		Sama_0898	0.89	+0.7
1,087,876	-		Sama_0898	0.89	-1.9
1,087,876	-		Sama_0898	0.89	-0.9
1,087,876	-		Sama_0898	0.89	-1.6
1,087,883	+		Sama_0898	0.89	-0.9
1,087,884	-		Sama_0898	0.89	+0.1
1,087,988	+				-2.8
1,088,118	+				-3.2
1,088,121	+				-3.0
1,088,121	+				-2.3
1,088,121	+				-1.8
1,088,121	+				-2.1
1,088,121	+				-3.5
1,088,122	-				-1.2
1,088,122	-				+0.9
1,088,134	+				-3.5
1,088,134	+				-0.9
1,088,190	-				-0.9
1,088,235	+				-2.5
1,088,235	+				-3.8
1,088,268	+				-2.5
1,088,268	+				-4.0
1,088,268	+				-2.3
1,088,269	-				-0.3
1,088,313	+				+0.3
1,088,313	+				-0.3
1,088,313	+				+1.4
1,088,313	+				+0.3
1,088,314	-				-0.4
1,088,314	-				+2.4
1,088,327	+				+0.5
1,088,381	+				+1.1
1,088,381	+				+0.0
1,088,381	+				+1.0
1,088,382	-				+0.3
1,088,382	-				+0.0
1,088,382	-				+0.4
1,088,382	-				-1.1
1,088,393	+				-0.0
1,088,393	+				-1.4
1,088,393	+				+0.6
1,088,394	-				+0.7
1,088,394	-				+0.8
1,088,520	-		Sama_0899	0.42	-0.3
1,088,549	-		Sama_0899	0.50	-0.0
1,088,549	-		Sama_0899	0.50	+2.4
1,088,616	+		Sama_0899	0.69	+0.4
1,088,616	+		Sama_0899	0.69	-1.3
1,088,616	+		Sama_0899	0.69	+1.1
1,088,616	+		Sama_0899	0.69	-0.1
1,088,617	-		Sama_0899	0.69	+2.0
1,088,617	-		Sama_0899	0.69	-0.5
1,088,617	-		Sama_0899	0.69	-0.8
1,088,617	-		Sama_0899	0.69	+0.4
1,088,617	-		Sama_0899	0.69	+1.6
1,088,617	-		Sama_0899	0.69	+1.2
1,088,617	-		Sama_0899	0.69	+0.5
1,088,617	-		Sama_0899	0.69	-0.6
1,088,617	-		Sama_0899	0.69	-0.4
1,088,686	-		Sama_0899	0.88	-0.2
1,088,691	+		Sama_0899	0.90	-0.2
1,088,691	+		Sama_0899	0.90	+0.4
1,088,692	-				+0.7
1,088,692	-				+0.7
1,088,692	-				+1.6
1,088,692	-				-0.9
1,088,696	-				+0.5
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