Strain Fitness in Shewanella oneidensis MR-1 around SO4174

Experiment: benzoic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	benzoic 0.4 mg/ml
4,345,597	+		SO4173	0.30	-0.0
4,345,605	-		SO4173	0.30	-1.6
4,345,799	+		SO4173	0.45	+0.3
4,345,809	-		SO4173	0.46	-0.1
4,345,809	-		SO4173	0.46	-0.4
4,345,853	-		SO4173	0.50	+0.0
4,345,853	-		SO4173	0.50	-0.7
4,345,890	+		SO4173	0.53	-0.4
4,345,942	-		SO4173	0.57	+0.1
4,345,969	-		SO4173	0.59	-0.4
4,345,989	+		SO4173	0.60	+0.2
4,345,999	+		SO4173	0.61	+0.2
4,346,007	-		SO4173	0.62	-0.9
4,346,032	+		SO4173	0.64	+0.2
4,346,040	-		SO4173	0.64	+0.2
4,346,061	+		SO4173	0.66	+1.0
4,346,134	+		SO4173	0.71	+0.1
4,346,142	-		SO4173	0.72	+0.4
4,346,268	+		SO4173	0.82	-0.3
4,346,309	-		SO4173	0.85	-0.1
4,346,311	+		SO4173	0.85	+0.6
4,346,319	-		SO4173	0.86	+0.2
4,346,431	+				+0.1
4,346,431	+				-0.5
4,346,431	+				+0.4
4,346,439	-				-0.3
4,346,439	-				-0.2
4,346,440	-				+0.4
4,346,447	-				+0.6
4,346,457	-				+0.2
4,346,498	+				+0.2
4,346,505	+				+0.3
4,346,519	-				-0.3
4,346,540	-				+0.3
4,346,559	+				-0.3
4,346,560	+				-0.4
4,346,567	-				-0.7
4,346,568	-				+0.1
4,346,628	-		SO4174	0.14	+0.2
4,346,687	+		SO4174	0.20	+0.2
4,346,706	+		SO4174	0.22	-0.0
4,346,719	-		SO4174	0.24	+0.2
4,346,735	+		SO4174	0.26	-0.2
4,346,767	+		SO4174	0.29	-0.3
4,346,775	-		SO4174	0.30	+0.6
4,346,860	+		SO4174	0.39	+0.1
4,346,887	-		SO4174	0.42	-0.3
4,346,913	+		SO4174	0.45	+1.3
4,346,959	+		SO4174	0.50	+0.2
4,347,019	-		SO4174	0.56	+0.2
4,347,077	-		SO4174	0.63	+0.6
4,347,077	-		SO4174	0.63	-0.5
4,347,111	+		SO4174	0.66	+0.1
4,347,116	+		SO4174	0.67	+0.9
4,347,134	+		SO4174	0.69	+0.5
4,347,134	+		SO4174	0.69	+1.2
4,347,134	+				+2.8
4,347,201	+		SO4174	0.76	+3.3
4,347,206	+		SO4174	0.77	-0.1
4,347,209	-		SO4174	0.77	+0.4
4,347,224	-		SO4174	0.79	+0.1
4,347,226	+		SO4174	0.79	+0.2
4,347,319	+		SO4174	0.89	+0.3
4,347,424	+				+0.1
4,347,432	+				-0.2
4,347,507	+				+0.3
4,347,522	+				+0.4
4,347,522	+				+0.3
4,347,541	-				+0.1
4,347,638	+				-0.2
4,347,793	-				-0.8
4,348,016	+		SO4176	0.17	+0.4
4,348,024	-		SO4176	0.18	+1.3
4,348,035	-		SO4176	0.18	-0.1
4,348,335	-		SO4176	0.36	-0.2
4,348,357	-		SO4176	0.37	-0.9
4,348,371	+		SO4176	0.38	-2.7