Strain Fitness in Shewanella oneidensis MR-1 around SO2153

Experiment: benzoic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	benzoic 0.4 mg/ml
2,265,902	-		SO2151	0.30	-0.2
2,265,927	+		SO2151	0.32	+0.5
2,265,927	+		SO2151	0.32	+0.1
2,265,935	-		SO2151	0.33	+1.3
2,265,935	-		SO2151	0.33	+0.2
2,265,935	-		SO2151	0.33	-0.3
2,265,935	-		SO2151	0.33	-1.0
2,265,935	-		SO2151	0.33	-1.0
2,265,945	-		SO2151	0.34	-0.1
2,265,945	-		SO2151	0.34	-0.3
2,265,946	-		SO2151	0.34	-0.6
2,266,021	+		SO2151	0.41	-0.4
2,266,063	-		SO2151	0.45	+0.2
2,266,120	-		SO2151	0.51	-0.3
2,266,199	-		SO2151	0.58	+0.4
2,266,269	-		SO2151	0.65	-0.1
2,266,272	+		SO2151	0.65	-0.5
2,266,346	+		SO2151	0.72	-0.8
2,266,359	-		SO2151	0.74	-0.6
2,266,359	-		SO2151	0.74	+0.3
2,266,359	-		SO2151	0.74	+0.2
2,266,593	-				+0.6
2,266,611	-				-0.0
2,266,611	-				+0.3
2,266,615	+				-1.8
2,266,615	+				+0.4
2,266,620	+				-0.7
2,266,623	-				+0.1
2,266,623	-				+0.4
2,266,623	-				-0.6
2,266,623	-				+0.7
2,266,929	+	moxR	SO2153	0.22	-0.5
2,266,937	-	moxR	SO2153	0.22	+0.1
2,267,046	+	moxR	SO2153	0.34	+0.1
2,267,046	+	moxR	SO2153	0.34	+0.8
2,267,093	+	moxR	SO2153	0.40	+0.1
2,267,307	+	moxR	SO2153	0.63	-0.5
2,267,430	+	moxR	SO2153	0.77	+0.9
2,267,430	+	moxR	SO2153	0.77	-0.2
2,267,430	+	moxR	SO2153	0.77	-0.0
2,267,474	-	moxR	SO2153	0.81	-0.2
2,267,474	-	moxR	SO2153	0.81	+0.3
2,267,486	-	moxR	SO2153	0.83	+0.4
2,267,557	+				+1.6
2,267,565	-				+0.0
2,267,677	-				-1.7
2,267,710	-				-0.3
2,267,831	+				-0.6
2,267,834	+				+0.0
2,267,888	+				+0.4
2,267,959	+				+0.1
2,267,967	-				+0.2
2,267,967	-				+0.7
2,267,967	-				+0.4
2,268,001	-				-0.7
2,268,231	+				+0.1
2,268,231	+				+0.4
2,268,231	+				-0.8
2,268,231	+				+0.2
2,268,231	+				+0.3
2,268,239	-				-0.4
2,268,239	-				+0.2
2,268,239	-				+0.7
2,268,241	+				-0.9
2,268,445	-		SO2153.1	0.69	+0.1
2,268,481	-		SO2153.1	0.80	+1.0
2,268,486	-		SO2153.1	0.82	-0.2
2,268,607	+		SO2153.2	0.31	-0.1