Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3964 and Psest_3965 are separated by 202 nucleotides Psest_3965 and Psest_3966 are separated by 118 nucleotides Psest_3966 and Psest_3967 are separated by 36 nucleotides
Psest_3964: Psest_3964 - formate dehydrogenase family accessory protein FdhD, at 4,131,858 to 4,132,706
_3964
Psest_3965: Psest_3965 - hypothetical protein, at 4,132,909 to 4,133,367
_3965
Psest_3966: Psest_3966 - Predicted thioesterase, at 4,133,486 to 4,133,917
_3966
Psest_3967: Psest_3967 - Alcohol dehydrogenase, class IV, at 4,133,954 to 4,135,117
_3967
Position (kb) 4133
4134 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4132.550 kb on - strand, within Psest_3964 at 4132.550 kb on - strand, within Psest_3964 at 4132.550 kb on - strand, within Psest_3964 at 4132.550 kb on - strand, within Psest_3964 at 4132.671 kb on + strand at 4132.671 kb on + strand at 4132.671 kb on + strand at 4132.671 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.744 kb on - strand at 4132.915 kb on + strand at 4132.915 kb on + strand at 4132.915 kb on + strand at 4132.915 kb on + strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4133.025 kb on - strand, within Psest_3965 at 4133.025 kb on - strand, within Psest_3965 at 4133.184 kb on - strand, within Psest_3965 at 4133.184 kb on - strand, within Psest_3965 at 4133.190 kb on + strand, within Psest_3965 at 4133.308 kb on + strand, within Psest_3965 at 4133.309 kb on - strand, within Psest_3965 at 4133.309 kb on - strand, within Psest_3965 at 4133.309 kb on - strand, within Psest_3965 at 4133.311 kb on + strand, within Psest_3965 at 4133.311 kb on + strand, within Psest_3965 at 4133.312 kb on - strand, within Psest_3965 at 4133.312 kb on - strand, within Psest_3965 at 4133.341 kb on + strand at 4133.341 kb on + strand at 4133.341 kb on + strand at 4133.342 kb on - strand at 4133.342 kb on - strand at 4133.625 kb on + strand, within Psest_3966 at 4133.660 kb on + strand, within Psest_3966 at 4133.703 kb on + strand, within Psest_3966 at 4133.703 kb on + strand, within Psest_3966 at 4133.703 kb on + strand, within Psest_3966 at 4133.704 kb on - strand, within Psest_3966 at 4133.704 kb on - strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.809 kb on - strand, within Psest_3966 at 4133.811 kb on + strand, within Psest_3966 at 4133.811 kb on + strand, within Psest_3966 at 4133.811 kb on + strand, within Psest_3966 at 4133.812 kb on - strand, within Psest_3966 at 4133.835 kb on + strand, within Psest_3966 at 4133.835 kb on + strand, within Psest_3966 at 4133.835 kb on + strand, within Psest_3966 at 4133.835 kb on + strand, within Psest_3966 at 4133.836 kb on - strand, within Psest_3966 at 4133.836 kb on - strand, within Psest_3966 at 4133.839 kb on + strand, within Psest_3966 at 4133.839 kb on + strand, within Psest_3966 at 4133.840 kb on - strand, within Psest_3966 at 4133.840 kb on - strand, within Psest_3966 at 4133.860 kb on + strand, within Psest_3966 at 4133.860 kb on + strand, within Psest_3966 at 4133.883 kb on + strand at 4133.883 kb on + strand at 4133.883 kb on + strand at 4133.959 kb on - strand at 4133.970 kb on + strand at 4133.970 kb on + strand at 4133.970 kb on + strand at 4133.970 kb on + strand at 4133.971 kb on - strand at 4134.153 kb on + strand, within Psest_3967 at 4134.213 kb on + strand, within Psest_3967 at 4134.214 kb on - strand, within Psest_3967 at 4134.290 kb on - strand, within Psest_3967 at 4134.312 kb on + strand, within Psest_3967 at 4134.313 kb on - strand, within Psest_3967 at 4134.507 kb on + strand, within Psest_3967 at 4134.507 kb on + strand, within Psest_3967 at 4134.508 kb on - strand, within Psest_3967 at 4134.623 kb on + strand, within Psest_3967 at 4134.750 kb on + strand, within Psest_3967 at 4134.750 kb on + strand, within Psest_3967 at 4134.751 kb on - strand, within Psest_3967 at 4134.751 kb on - strand, within Psest_3967 at 4134.914 kb on + strand, within Psest_3967
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 4,132,550 - Psest_3964 0.82 -0.2 4,132,550 - Psest_3964 0.82 +1.8 4,132,550 - Psest_3964 0.82 -0.1 4,132,550 - Psest_3964 0.82 +0.0 4,132,671 + +0.5 4,132,671 + -0.9 4,132,671 + +0.2 4,132,671 + +1.0 4,132,730 + +0.5 4,132,730 + -0.5 4,132,730 + -0.1 4,132,730 + +0.4 4,132,730 + -0.8 4,132,730 + +0.1 4,132,730 + +0.0 4,132,730 + -0.1 4,132,730 + +0.5 4,132,730 + +0.4 4,132,730 + +0.2 4,132,730 + +0.6 4,132,730 + +0.3 4,132,730 + +0.7 4,132,730 + +0.6 4,132,744 - +0.3 4,132,915 + +0.0 4,132,915 + +1.5 4,132,915 + +0.6 4,132,915 + +0.6 4,132,916 - -0.5 4,132,916 - -0.0 4,132,916 - +0.6 4,132,916 - +0.5 4,132,916 - +0.6 4,132,916 - -1.6 4,133,025 - Psest_3965 0.25 +1.0 4,133,025 - Psest_3965 0.25 -0.1 4,133,184 - Psest_3965 0.60 +0.4 4,133,184 - Psest_3965 0.60 -0.1 4,133,190 + Psest_3965 0.61 +1.6 4,133,308 + Psest_3965 0.87 +1.7 4,133,309 - Psest_3965 0.87 +0.4 4,133,309 - Psest_3965 0.87 -0.1 4,133,309 - Psest_3965 0.87 +0.4 4,133,311 + Psest_3965 0.88 +1.5 4,133,311 + Psest_3965 0.88 +0.5 4,133,312 - Psest_3965 0.88 -0.5 4,133,312 - Psest_3965 0.88 -0.9 4,133,341 + +1.9 4,133,341 + +0.2 4,133,341 + +0.6 4,133,342 - +0.8 4,133,342 - +0.5 4,133,625 + Psest_3966 0.32 +0.6 4,133,660 + Psest_3966 0.40 +1.8 4,133,703 + Psest_3966 0.50 +0.7 4,133,703 + Psest_3966 0.50 -0.9 4,133,703 + Psest_3966 0.50 -2.6 4,133,704 - Psest_3966 0.50 -0.2 4,133,704 - Psest_3966 0.50 +1.4 4,133,778 + Psest_3966 0.68 -0.9 4,133,778 + Psest_3966 0.68 +1.1 4,133,778 + Psest_3966 0.68 +0.1 4,133,778 + Psest_3966 0.68 +0.5 4,133,778 + Psest_3966 0.68 +0.1 4,133,778 + Psest_3966 0.68 -0.5 4,133,778 + Psest_3966 0.68 -0.2 4,133,778 + Psest_3966 0.68 +0.6 4,133,778 + Psest_3966 0.68 +1.8 4,133,778 + Psest_3966 0.68 +0.4 4,133,778 + Psest_3966 0.68 +1.4 4,133,778 + Psest_3966 0.68 +0.3 4,133,779 - Psest_3966 0.68 +0.8 4,133,779 - Psest_3966 0.68 +2.5 4,133,779 - Psest_3966 0.68 +0.9 4,133,779 - Psest_3966 0.68 -0.4 4,133,779 - Psest_3966 0.68 +2.0 4,133,779 - Psest_3966 0.68 +0.7 4,133,779 - Psest_3966 0.68 +0.7 4,133,779 - Psest_3966 0.68 +0.1 4,133,779 - Psest_3966 0.68 -0.4 4,133,779 - Psest_3966 0.68 +2.0 4,133,779 - Psest_3966 0.68 +1.2 4,133,779 - Psest_3966 0.68 +1.1 4,133,779 - Psest_3966 0.68 +0.4 4,133,779 - Psest_3966 0.68 +1.1 4,133,809 - Psest_3966 0.75 +0.9 4,133,811 + Psest_3966 0.75 +1.1 4,133,811 + Psest_3966 0.75 +0.0 4,133,811 + Psest_3966 0.75 +0.4 4,133,812 - Psest_3966 0.75 -0.1 4,133,835 + Psest_3966 0.81 +0.9 4,133,835 + Psest_3966 0.81 +0.8 4,133,835 + Psest_3966 0.81 +2.4 4,133,835 + Psest_3966 0.81 -0.1 4,133,836 - Psest_3966 0.81 -0.1 4,133,836 - Psest_3966 0.81 +0.3 4,133,839 + Psest_3966 0.82 +0.4 4,133,839 + Psest_3966 0.82 +0.8 4,133,840 - Psest_3966 0.82 +0.5 4,133,840 - Psest_3966 0.82 +0.2 4,133,860 + Psest_3966 0.87 +1.0 4,133,860 + Psest_3966 0.87 -0.1 4,133,883 + +0.1 4,133,883 + +0.5 4,133,883 + +0.1 4,133,959 - +0.4 4,133,970 + -0.5 4,133,970 + +1.4 4,133,970 + -0.0 4,133,970 + -0.2 4,133,971 - -0.2 4,134,153 + Psest_3967 0.17 -0.2 4,134,213 + Psest_3967 0.22 +0.8 4,134,214 - Psest_3967 0.22 +0.9 4,134,290 - Psest_3967 0.29 -0.6 4,134,312 + Psest_3967 0.31 +0.3 4,134,313 - Psest_3967 0.31 -0.6 4,134,507 + Psest_3967 0.48 +1.2 4,134,507 + Psest_3967 0.48 +0.8 4,134,508 - Psest_3967 0.48 +1.0 4,134,623 + Psest_3967 0.57 +0.6 4,134,750 + Psest_3967 0.68 +0.1 4,134,750 + Psest_3967 0.68 -0.1 4,134,751 - Psest_3967 0.68 +0.1 4,134,751 - Psest_3967 0.68 +0.1 4,134,914 + Psest_3967 0.82 +0.0
Or see this region's nucleotide sequence