Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1375

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1374 and Psest_1375 are separated by 352 nucleotidesPsest_1375 and Psest_1376 are separated by 51 nucleotidesPsest_1376 and Psest_1377 are separated by 68 nucleotides Psest_1374: Psest_1374 - Arabinose efflux permease, at 1,483,006 to 1,484,232 _1374 Psest_1375: Psest_1375 - Methyl-accepting chemotaxis protein, at 1,484,585 to 1,486,606 _1375 Psest_1376: Psest_1376 - hypothetical protein, at 1,486,658 to 1,487,008 _1376 Psest_1377: Psest_1377 - hypothetical protein, at 1,487,077 to 1,487,757 _1377 Position (kb) 1484 1485 1486 1487Strain fitness (log2 ratio) -2 -1 0 1 2at 1483.677 kb on + strand, within Psest_1374at 1483.862 kb on + strand, within Psest_1374at 1483.862 kb on + strand, within Psest_1374at 1483.862 kb on + strand, within Psest_1374at 1483.863 kb on - strand, within Psest_1374at 1483.863 kb on - strand, within Psest_1374at 1483.863 kb on - strand, within Psest_1374at 1484.045 kb on + strand, within Psest_1374at 1484.045 kb on + strand, within Psest_1374at 1484.046 kb on - strand, within Psest_1374at 1484.046 kb on - strand, within Psest_1374at 1484.046 kb on - strand, within Psest_1374at 1484.046 kb on - strand, within Psest_1374at 1484.236 kb on + strandat 1484.265 kb on - strandat 1484.265 kb on - strandat 1484.420 kb on - strandat 1484.439 kb on + strandat 1484.439 kb on + strandat 1484.440 kb on - strandat 1484.633 kb on + strandat 1484.633 kb on + strandat 1485.008 kb on + strand, within Psest_1375at 1485.008 kb on + strand, within Psest_1375at 1485.104 kb on + strand, within Psest_1375at 1485.104 kb on + strand, within Psest_1375at 1485.104 kb on + strand, within Psest_1375at 1485.104 kb on + strand, within Psest_1375at 1485.105 kb on - strand, within Psest_1375at 1485.105 kb on - strand, within Psest_1375at 1485.105 kb on - strand, within Psest_1375at 1485.105 kb on - strand, within Psest_1375at 1485.105 kb on - strand, within Psest_1375at 1485.105 kb on - strand, within Psest_1375at 1485.105 kb on - strand, within Psest_1375at 1485.105 kb on - strand, within Psest_1375at 1485.107 kb on + strand, within Psest_1375at 1485.107 kb on + strand, within Psest_1375at 1485.108 kb on - strand, within Psest_1375at 1485.108 kb on - strand, within Psest_1375at 1485.108 kb on - strand, within Psest_1375at 1485.108 kb on - strand, within Psest_1375at 1485.476 kb on + strand, within Psest_1375at 1485.476 kb on + strand, within Psest_1375at 1485.476 kb on + strand, within Psest_1375at 1485.476 kb on + strand, within Psest_1375at 1485.476 kb on + strand, within Psest_1375at 1485.476 kb on + strand, within Psest_1375at 1485.476 kb on + strand, within Psest_1375at 1485.476 kb on + strand, within Psest_1375at 1485.477 kb on - strand, within Psest_1375at 1485.477 kb on - strand, within Psest_1375at 1485.477 kb on - strand, within Psest_1375at 1485.477 kb on - strand, within Psest_1375at 1485.477 kb on - strand, within Psest_1375at 1485.477 kb on - strand, within Psest_1375at 1485.477 kb on - strand, within Psest_1375at 1485.574 kb on - strand, within Psest_1375at 1485.590 kb on + strand, within Psest_1375at 1485.608 kb on + strand, within Psest_1375at 1485.608 kb on + strand, within Psest_1375at 1485.609 kb on - strand, within Psest_1375at 1485.716 kb on + strand, within Psest_1375at 1485.716 kb on + strand, within Psest_1375at 1485.716 kb on + strand, within Psest_1375at 1485.717 kb on - strand, within Psest_1375at 1485.717 kb on - strand, within Psest_1375at 1486.309 kb on + strand, within Psest_1375at 1486.404 kb on + strandat 1486.405 kb on - strandat 1486.405 kb on - strandat 1486.812 kb on + strand, within Psest_1376at 1486.812 kb on + strand, within Psest_1376at 1486.812 kb on + strand, within Psest_1376at 1486.812 kb on + strand, within Psest_1376at 1486.812 kb on + strand, within Psest_1376at 1486.812 kb on + strand, within Psest_1376at 1486.813 kb on - strand, within Psest_1376at 1486.813 kb on - strand, within Psest_1376at 1486.813 kb on - strand, within Psest_1376at 1486.813 kb on - strand, within Psest_1376at 1486.822 kb on + strand, within Psest_1376at 1486.822 kb on + strand, within Psest_1376at 1486.822 kb on + strand, within Psest_1376at 1486.822 kb on + strand, within Psest_1376at 1486.822 kb on + strand, within Psest_1376at 1486.823 kb on - strand, within Psest_1376at 1486.823 kb on - strand, within Psest_1376at 1486.823 kb on - strand, within Psest_1376at 1486.823 kb on - strand, within Psest_1376at 1486.823 kb on - strand, within Psest_1376at 1486.823 kb on - strand, within Psest_1376at 1486.823 kb on - strand, within Psest_1376at 1486.869 kb on + strand, within Psest_1376at 1486.885 kb on + strand, within Psest_1376at 1486.895 kb on - strand, within Psest_1376at 1486.961 kb on + strand, within Psest_1376at 1486.961 kb on + strand, within Psest_1376at 1486.986 kb on + strandat 1486.987 kb on - strandat 1486.987 kb on - strandat 1486.987 kb on - strandat 1487.102 kb on + strandat 1487.102 kb on + strandat 1487.102 kb on + strandat 1487.102 kb on + strandat 1487.102 kb on + strandat 1487.103 kb on - strandat 1487.103 kb on - strandat 1487.103 kb on - strandat 1487.103 kb on - strandat 1487.103 kb on - strandat 1487.240 kb on + strand, within Psest_1377at 1487.240 kb on + strand, within Psest_1377at 1487.240 kb on + strand, within Psest_1377at 1487.240 kb on + strand, within Psest_1377at 1487.240 kb on + strand, within Psest_1377at 1487.261 kb on + strand, within Psest_1377at 1487.261 kb on + strand, within Psest_1377at 1487.262 kb on - strand, within Psest_1377at 1487.282 kb on + strand, within Psest_1377at 1487.283 kb on - strand, within Psest_1377at 1487.283 kb on - strand, within Psest_1377at 1487.497 kb on - strand, within Psest_1377

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,483,677 + Psest_1374 0.55 -2.0
1,483,862 + Psest_1374 0.70 +1.1
1,483,862 + Psest_1374 0.70 -1.1
1,483,862 + Psest_1374 0.70 -0.1
1,483,863 - Psest_1374 0.70 +1.3
1,483,863 - Psest_1374 0.70 +0.5
1,483,863 - Psest_1374 0.70 -0.9
1,484,045 + Psest_1374 0.85 -0.9
1,484,045 + Psest_1374 0.85 +0.9
1,484,046 - Psest_1374 0.85 -1.2
1,484,046 - Psest_1374 0.85 +0.2
1,484,046 - Psest_1374 0.85 -0.3
1,484,046 - Psest_1374 0.85 -0.3
1,484,236 + -2.0
1,484,265 - -1.3
1,484,265 - +1.3
1,484,420 - +0.7
1,484,439 + -1.0
1,484,439 + +0.1
1,484,440 - -0.2
1,484,633 + -0.9
1,484,633 + +0.5
1,485,008 + Psest_1375 0.21 -0.7
1,485,008 + Psest_1375 0.21 -0.6
1,485,104 + Psest_1375 0.26 -0.6
1,485,104 + Psest_1375 0.26 -0.4
1,485,104 + Psest_1375 0.26 -0.4
1,485,104 + Psest_1375 0.26 -0.7
1,485,105 - Psest_1375 0.26 +0.8
1,485,105 - Psest_1375 0.26 -0.0
1,485,105 - Psest_1375 0.26 -0.9
1,485,105 - Psest_1375 0.26 -0.7
1,485,105 - Psest_1375 0.26 -0.9
1,485,105 - Psest_1375 0.26 -1.6
1,485,105 - Psest_1375 0.26 +0.8
1,485,105 - Psest_1375 0.26 +0.0
1,485,107 + Psest_1375 0.26 -1.2
1,485,107 + Psest_1375 0.26 -1.9
1,485,108 - Psest_1375 0.26 -0.3
1,485,108 - Psest_1375 0.26 -0.3
1,485,108 - Psest_1375 0.26 -1.2
1,485,108 - Psest_1375 0.26 -2.4
1,485,476 + Psest_1375 0.44 -0.9
1,485,476 + Psest_1375 0.44 -0.5
1,485,476 + Psest_1375 0.44 -0.2
1,485,476 + Psest_1375 0.44 -0.2
1,485,476 + Psest_1375 0.44 +0.6
1,485,476 + Psest_1375 0.44 +0.3
1,485,476 + Psest_1375 0.44 -0.9
1,485,476 + Psest_1375 0.44 -0.2
1,485,477 - Psest_1375 0.44 -0.9
1,485,477 - Psest_1375 0.44 -0.7
1,485,477 - Psest_1375 0.44 +0.2
1,485,477 - Psest_1375 0.44 +0.4
1,485,477 - Psest_1375 0.44 +1.7
1,485,477 - Psest_1375 0.44 -0.1
1,485,477 - Psest_1375 0.44 +0.6
1,485,574 - Psest_1375 0.49 -1.1
1,485,590 + Psest_1375 0.50 +2.4
1,485,608 + Psest_1375 0.51 -0.5
1,485,608 + Psest_1375 0.51 +0.1
1,485,609 - Psest_1375 0.51 -0.4
1,485,716 + Psest_1375 0.56 -0.2
1,485,716 + Psest_1375 0.56 +0.9
1,485,716 + Psest_1375 0.56 +1.1
1,485,717 - Psest_1375 0.56 -0.3
1,485,717 - Psest_1375 0.56 -0.9
1,486,309 + Psest_1375 0.85 +0.4
1,486,404 + +0.7
1,486,405 - +0.3
1,486,405 - +0.7
1,486,812 + Psest_1376 0.44 -1.2
1,486,812 + Psest_1376 0.44 -0.7
1,486,812 + Psest_1376 0.44 +1.7
1,486,812 + Psest_1376 0.44 -0.2
1,486,812 + Psest_1376 0.44 +1.3
1,486,812 + Psest_1376 0.44 +0.1
1,486,813 - Psest_1376 0.44 -1.7
1,486,813 - Psest_1376 0.44 +1.1
1,486,813 - Psest_1376 0.44 +0.5
1,486,813 - Psest_1376 0.44 +0.1
1,486,822 + Psest_1376 0.47 -0.7
1,486,822 + Psest_1376 0.47 -0.4
1,486,822 + Psest_1376 0.47 -0.8
1,486,822 + Psest_1376 0.47 -1.7
1,486,822 + Psest_1376 0.47 +0.1
1,486,823 - Psest_1376 0.47 +0.2
1,486,823 - Psest_1376 0.47 -0.3
1,486,823 - Psest_1376 0.47 -1.4
1,486,823 - Psest_1376 0.47 +0.5
1,486,823 - Psest_1376 0.47 -0.4
1,486,823 - Psest_1376 0.47 +0.1
1,486,823 - Psest_1376 0.47 +0.6
1,486,869 + Psest_1376 0.60 +0.7
1,486,885 + Psest_1376 0.65 -0.6
1,486,895 - Psest_1376 0.68 +1.3
1,486,961 + Psest_1376 0.86 +0.6
1,486,961 + Psest_1376 0.86 -0.6
1,486,986 + -1.7
1,486,987 - -0.6
1,486,987 - +0.0
1,486,987 - -0.8
1,487,102 + -1.2
1,487,102 + +0.5
1,487,102 + +0.0
1,487,102 + -0.2
1,487,102 + -0.7
1,487,103 - -0.7
1,487,103 - -0.3
1,487,103 - -0.4
1,487,103 - +1.1
1,487,103 - +0.6
1,487,240 + Psest_1377 0.24 -1.3
1,487,240 + Psest_1377 0.24 +0.6
1,487,240 + Psest_1377 0.24 +0.1
1,487,240 + Psest_1377 0.24 -1.2
1,487,240 + Psest_1377 0.24 -0.8
1,487,261 + Psest_1377 0.27 -0.9
1,487,261 + Psest_1377 0.27 +0.7
1,487,262 - Psest_1377 0.27 +0.2
1,487,282 + Psest_1377 0.30 -0.2
1,487,283 - Psest_1377 0.30 +0.1
1,487,283 - Psest_1377 0.30 -1.0
1,487,497 - Psest_1377 0.62 +2.1

Or see this region's nucleotide sequence