Strain Fitness in Dechlorosoma suillum PS around Dsui_3232

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3231 and Dsui_3232 are separated by 253 nucleotidesDsui_3232 and Dsui_3233 are separated by 14 nucleotidesDsui_3233 and Dsui_3234 are separated by 69 nucleotides Dsui_3231: Dsui_3231 - hypothetical protein, at 3,471,239 to 3,474,592 _3231 Dsui_3232: Dsui_3232 - activator of osmoprotectant transporter ProP, at 3,474,846 to 3,475,268 _3232 Dsui_3233: Dsui_3233 - hypothetical protein, at 3,475,283 to 3,475,750 _3233 Dsui_3234: Dsui_3234 - putative proteasome-type protease, at 3,475,820 to 3,476,548 _3234 Position (kb) 3474 3475 3476Strain fitness (log2 ratio) -1 0 1 2at 3473.888 kb on + strand, within Dsui_3231at 3473.893 kb on - strand, within Dsui_3231at 3474.080 kb on + strandat 3474.090 kb on - strandat 3474.147 kb on - strandat 3474.435 kb on - strandat 3474.491 kb on + strandat 3474.499 kb on - strandat 3474.584 kb on + strandat 3474.599 kb on + strandat 3474.607 kb on - strandat 3474.719 kb on - strandat 3474.811 kb on + strandat 3474.850 kb on + strandat 3474.973 kb on - strandat 3475.117 kb on + strand, within Dsui_3232at 3475.139 kb on + strand, within Dsui_3232at 3475.195 kb on - strand, within Dsui_3232at 3475.278 kb on - strandat 3475.573 kb on + strand, within Dsui_3233at 3475.581 kb on - strand, within Dsui_3233at 3475.665 kb on - strandat 3475.667 kb on + strand, within Dsui_3233at 3475.725 kb on - strandat 3475.766 kb on + strandat 3475.774 kb on - strandat 3475.831 kb on - strandat 3475.935 kb on + strand, within Dsui_3234at 3475.935 kb on + strand, within Dsui_3234at 3475.990 kb on + strand, within Dsui_3234at 3476.041 kb on + strand, within Dsui_3234at 3476.041 kb on + strandat 3476.041 kb on + strand, within Dsui_3234at 3476.042 kb on + strand, within Dsui_3234at 3476.130 kb on - strand, within Dsui_3234at 3476.169 kb on + strand, within Dsui_3234at 3476.184 kb on + strand, within Dsui_3234

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,473,888 + Dsui_3231 0.79 +1.5
3,473,893 - Dsui_3231 0.79 -1.7
3,474,080 + +0.5
3,474,090 - -0.5
3,474,147 - -0.9
3,474,435 - +2.5
3,474,491 + +1.5
3,474,499 - -0.9
3,474,584 + +0.1
3,474,599 + -0.1
3,474,607 - -0.3
3,474,719 - +0.2
3,474,811 + +1.6
3,474,850 + -0.2
3,474,973 - +0.9
3,475,117 + Dsui_3232 0.64 -0.1
3,475,139 + Dsui_3232 0.69 +0.8
3,475,195 - Dsui_3232 0.83 +0.6
3,475,278 - +0.5
3,475,573 + Dsui_3233 0.62 +0.4
3,475,581 - Dsui_3233 0.64 -0.6
3,475,665 - +0.5
3,475,667 + Dsui_3233 0.82 -0.2
3,475,725 - +0.5
3,475,766 + +0.2
3,475,774 - -0.2
3,475,831 - -0.1
3,475,935 + Dsui_3234 0.16 -0.7
3,475,935 + Dsui_3234 0.16 -0.0
3,475,990 + Dsui_3234 0.23 -0.0
3,476,041 + Dsui_3234 0.30 -1.4
3,476,041 + -0.1
3,476,041 + Dsui_3234 0.30 -0.7
3,476,042 + Dsui_3234 0.30 -0.3
3,476,130 - Dsui_3234 0.43 +0.1
3,476,169 + Dsui_3234 0.48 -0.4
3,476,184 + Dsui_3234 0.50 -1.1

Or see this region's nucleotide sequence