Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3186 and Dsui_3187 are separated by 45 nucleotides Dsui_3187 and Dsui_3188 are separated by 12 nucleotides Dsui_3188 and Dsui_3189 are separated by 13 nucleotides
Dsui_3186: Dsui_3186 - amidophosphoribosyltransferase, at 3,420,018 to 3,421,556
_3186
Dsui_3187: Dsui_3187 - putative membrane protein, required for colicin V production, at 3,421,602 to 3,422,096
_3187
Dsui_3188: Dsui_3188 - hypothetical protein, at 3,422,109 to 3,422,846
_3188
Dsui_3189: Dsui_3189 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,422,860 to 3,424,176
_3189
Position (kb)
3421
3422
3423 Strain fitness (log2 ratio)
-1
0
1 at 3421.640 kb on + strand at 3421.640 kb on + strand at 3421.653 kb on - strand, within Dsui_3187 at 3421.764 kb on + strand at 3421.796 kb on - strand, within Dsui_3187 at 3421.816 kb on - strand, within Dsui_3187 at 3421.817 kb on - strand, within Dsui_3187 at 3421.836 kb on + strand at 3421.944 kb on + strand at 3421.952 kb on - strand, within Dsui_3187 at 3421.963 kb on - strand, within Dsui_3187 at 3422.045 kb on + strand at 3422.053 kb on - strand at 3422.063 kb on - strand at 3422.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 3,421,640 + +0.7 3,421,640 + -1.7 3,421,653 - Dsui_3187 0.10 +0.0 3,421,764 + -0.9 3,421,796 - Dsui_3187 0.39 +0.2 3,421,816 - Dsui_3187 0.43 +0.0 3,421,817 - Dsui_3187 0.43 -0.2 3,421,836 + +0.9 3,421,944 + +1.5 3,421,952 - Dsui_3187 0.71 -0.9 3,421,963 - Dsui_3187 0.73 -0.5 3,422,045 + -0.1 3,422,053 - +0.9 3,422,063 - -0.6 3,422,089 - -0.8
Or see this region's nucleotide sequence