Strain Fitness in Dechlorosoma suillum PS around Dsui_3187

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3186 and Dsui_3187 are separated by 45 nucleotidesDsui_3187 and Dsui_3188 are separated by 12 nucleotidesDsui_3188 and Dsui_3189 are separated by 13 nucleotides Dsui_3186: Dsui_3186 - amidophosphoribosyltransferase, at 3,420,018 to 3,421,556 _3186 Dsui_3187: Dsui_3187 - putative membrane protein, required for colicin V production, at 3,421,602 to 3,422,096 _3187 Dsui_3188: Dsui_3188 - hypothetical protein, at 3,422,109 to 3,422,846 _3188 Dsui_3189: Dsui_3189 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,422,860 to 3,424,176 _3189 Position (kb) 3421 3422 3423Strain fitness (log2 ratio) -1 0 1at 3421.640 kb on + strandat 3421.640 kb on + strandat 3421.653 kb on - strand, within Dsui_3187at 3421.764 kb on + strandat 3421.796 kb on - strand, within Dsui_3187at 3421.816 kb on - strand, within Dsui_3187at 3421.817 kb on - strand, within Dsui_3187at 3421.836 kb on + strandat 3421.944 kb on + strandat 3421.952 kb on - strand, within Dsui_3187at 3421.963 kb on - strand, within Dsui_3187at 3422.045 kb on + strandat 3422.053 kb on - strandat 3422.063 kb on - strandat 3422.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,421,640 + +0.7
3,421,640 + -1.7
3,421,653 - Dsui_3187 0.10 +0.0
3,421,764 + -0.9
3,421,796 - Dsui_3187 0.39 +0.2
3,421,816 - Dsui_3187 0.43 +0.0
3,421,817 - Dsui_3187 0.43 -0.2
3,421,836 + +0.9
3,421,944 + +1.5
3,421,952 - Dsui_3187 0.71 -0.9
3,421,963 - Dsui_3187 0.73 -0.5
3,422,045 + -0.1
3,422,053 - +0.9
3,422,063 - -0.6
3,422,089 - -0.8

Or see this region's nucleotide sequence