Strain Fitness in Dechlorosoma suillum PS around Dsui_3144

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3142 and Dsui_3143 are separated by 3 nucleotidesDsui_3143 and Dsui_3144 overlap by 4 nucleotidesDsui_3144 and Dsui_3145 overlap by 4 nucleotides Dsui_3142: Dsui_3142 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, at 3,364,428 to 3,365,666 _3142 Dsui_3143: Dsui_3143 - hypothetical protein, at 3,365,670 to 3,366,620 _3143 Dsui_3144: Dsui_3144 - type IV pilus biogenesis/stability protein PilW, at 3,366,617 to 3,367,435 _3144 Dsui_3145: Dsui_3145 - 23S rRNA m2A2503 methyltransferase, at 3,367,432 to 3,368,535 _3145 Position (kb) 3366 3367 3368Strain fitness (log2 ratio) -1 0 1at 3366.649 kb on - strandat 3366.738 kb on - strand, within Dsui_3144at 3366.804 kb on - strand, within Dsui_3144at 3366.842 kb on + strandat 3366.972 kb on - strand, within Dsui_3144at 3367.144 kb on - strand, within Dsui_3144at 3367.202 kb on - strand, within Dsui_3144at 3367.212 kb on - strand, within Dsui_3144at 3367.837 kb on - strand, within Dsui_3145

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,366,649 - -0.1
3,366,738 - Dsui_3144 0.15 +0.5
3,366,804 - Dsui_3144 0.23 +0.8
3,366,842 + -0.1
3,366,972 - Dsui_3144 0.43 +0.6
3,367,144 - Dsui_3144 0.64 +0.1
3,367,202 - Dsui_3144 0.71 +0.4
3,367,212 - Dsui_3144 0.73 +0.3
3,367,837 - Dsui_3145 0.37 +0.9

Or see this region's nucleotide sequence