Strain Fitness in Dechlorosoma suillum PS around Dsui_3104

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3103 and Dsui_3104 are separated by 16 nucleotidesDsui_3104 and Dsui_3105 are separated by 54 nucleotides Dsui_3103: Dsui_3103 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 3,320,958 to 3,322,157 _3103 Dsui_3104: Dsui_3104 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,322,174 to 3,324,675 _3104 Dsui_3105: Dsui_3105 - CBS domain-containing protein, at 3,324,730 to 3,326,046 _3105 Position (kb) 3322 3323 3324 3325Strain fitness (log2 ratio) -2 -1 0 1 2at 3321.203 kb on + strand, within Dsui_3103at 3321.319 kb on - strand, within Dsui_3103at 3321.337 kb on - strand, within Dsui_3103at 3321.359 kb on + strand, within Dsui_3103at 3321.359 kb on + strand, within Dsui_3103at 3321.372 kb on - strand, within Dsui_3103at 3321.465 kb on + strand, within Dsui_3103at 3321.519 kb on - strand, within Dsui_3103at 3321.643 kb on - strand, within Dsui_3103at 3321.682 kb on + strand, within Dsui_3103at 3321.748 kb on + strand, within Dsui_3103at 3321.796 kb on + strand, within Dsui_3103at 3321.801 kb on + strand, within Dsui_3103at 3321.929 kb on + strand, within Dsui_3103at 3321.956 kb on + strand, within Dsui_3103at 3322.043 kb on + strandat 3322.127 kb on + strandat 3322.140 kb on - strandat 3322.172 kb on - strandat 3322.209 kb on + strandat 3322.243 kb on + strandat 3322.606 kb on - strand, within Dsui_3104at 3322.691 kb on + strand, within Dsui_3104at 3322.699 kb on - strand, within Dsui_3104at 3322.836 kb on + strand, within Dsui_3104at 3322.981 kb on - strand, within Dsui_3104at 3322.984 kb on - strand, within Dsui_3104at 3323.011 kb on + strand, within Dsui_3104at 3323.051 kb on - strand, within Dsui_3104at 3323.123 kb on + strand, within Dsui_3104at 3323.220 kb on - strand, within Dsui_3104at 3323.318 kb on - strand, within Dsui_3104at 3323.341 kb on - strand, within Dsui_3104at 3323.421 kb on + strand, within Dsui_3104at 3323.457 kb on + strand, within Dsui_3104at 3323.500 kb on - strand, within Dsui_3104at 3323.540 kb on + strand, within Dsui_3104at 3323.568 kb on + strand, within Dsui_3104at 3323.568 kb on + strand, within Dsui_3104at 3323.576 kb on - strand, within Dsui_3104at 3323.718 kb on + strand, within Dsui_3104at 3323.726 kb on - strand, within Dsui_3104at 3323.726 kb on - strand, within Dsui_3104at 3323.727 kb on + strand, within Dsui_3104at 3323.749 kb on + strand, within Dsui_3104at 3323.817 kb on - strand, within Dsui_3104at 3323.825 kb on - strand, within Dsui_3104at 3324.226 kb on - strand, within Dsui_3104at 3324.242 kb on + strand, within Dsui_3104at 3324.295 kb on - strand, within Dsui_3104at 3324.302 kb on - strand, within Dsui_3104at 3324.375 kb on - strand, within Dsui_3104at 3324.432 kb on + strandat 3324.432 kb on + strandat 3324.440 kb on - strandat 3324.523 kb on - strandat 3324.609 kb on - strandat 3324.700 kb on + strandat 3324.871 kb on - strand, within Dsui_3105at 3324.943 kb on - strand, within Dsui_3105at 3325.164 kb on + strand, within Dsui_3105at 3325.172 kb on - strand, within Dsui_3105at 3325.175 kb on - strand, within Dsui_3105at 3325.245 kb on - strand, within Dsui_3105at 3325.247 kb on + strand, within Dsui_3105at 3325.255 kb on - strand, within Dsui_3105at 3325.255 kb on - strand, within Dsui_3105at 3325.255 kb on - strand, within Dsui_3105at 3325.257 kb on + strand, within Dsui_3105at 3325.534 kb on - strand, within Dsui_3105

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,321,203 + Dsui_3103 0.20 +0.8
3,321,319 - Dsui_3103 0.30 +1.6
3,321,337 - Dsui_3103 0.32 +1.0
3,321,359 + Dsui_3103 0.33 +1.0
3,321,359 + Dsui_3103 0.33 +0.7
3,321,372 - Dsui_3103 0.34 +0.5
3,321,465 + Dsui_3103 0.42 +0.6
3,321,519 - Dsui_3103 0.47 +1.1
3,321,643 - Dsui_3103 0.57 -1.1
3,321,682 + Dsui_3103 0.60 +0.1
3,321,748 + Dsui_3103 0.66 +0.9
3,321,796 + Dsui_3103 0.70 +0.3
3,321,801 + Dsui_3103 0.70 +0.2
3,321,929 + Dsui_3103 0.81 +0.3
3,321,956 + Dsui_3103 0.83 +1.2
3,322,043 + -0.1
3,322,127 + +0.5
3,322,140 - +0.6
3,322,172 - +2.0
3,322,209 + +0.1
3,322,243 + +0.5
3,322,606 - Dsui_3104 0.17 +1.2
3,322,691 + Dsui_3104 0.21 +1.1
3,322,699 - Dsui_3104 0.21 +0.6
3,322,836 + Dsui_3104 0.26 +1.0
3,322,981 - Dsui_3104 0.32 +0.3
3,322,984 - Dsui_3104 0.32 +1.5
3,323,011 + Dsui_3104 0.33 +1.2
3,323,051 - Dsui_3104 0.35 +0.5
3,323,123 + Dsui_3104 0.38 +1.3
3,323,220 - Dsui_3104 0.42 +0.7
3,323,318 - Dsui_3104 0.46 +0.6
3,323,341 - Dsui_3104 0.47 +1.7
3,323,421 + Dsui_3104 0.50 +1.1
3,323,457 + Dsui_3104 0.51 +1.3
3,323,500 - Dsui_3104 0.53 +0.7
3,323,540 + Dsui_3104 0.55 +1.6
3,323,568 + Dsui_3104 0.56 +1.1
3,323,568 + Dsui_3104 0.56 +1.3
3,323,576 - Dsui_3104 0.56 +0.3
3,323,718 + Dsui_3104 0.62 +1.2
3,323,726 - Dsui_3104 0.62 +1.2
3,323,726 - Dsui_3104 0.62 +0.4
3,323,727 + Dsui_3104 0.62 +1.4
3,323,749 + Dsui_3104 0.63 +1.1
3,323,817 - Dsui_3104 0.66 -1.2
3,323,825 - Dsui_3104 0.66 +0.7
3,324,226 - Dsui_3104 0.82 +1.6
3,324,242 + Dsui_3104 0.83 +1.2
3,324,295 - Dsui_3104 0.85 +1.4
3,324,302 - Dsui_3104 0.85 +2.3
3,324,375 - Dsui_3104 0.88 +1.0
3,324,432 + +1.2
3,324,432 + +0.1
3,324,440 - +0.6
3,324,523 - +1.5
3,324,609 - +1.1
3,324,700 + +0.4
3,324,871 - Dsui_3105 0.11 +0.5
3,324,943 - Dsui_3105 0.16 +1.1
3,325,164 + Dsui_3105 0.33 +0.5
3,325,172 - Dsui_3105 0.34 +1.1
3,325,175 - Dsui_3105 0.34 +0.9
3,325,245 - Dsui_3105 0.39 +0.3
3,325,247 + Dsui_3105 0.39 -1.8
3,325,255 - Dsui_3105 0.40 +1.2
3,325,255 - Dsui_3105 0.40 +0.8
3,325,255 - Dsui_3105 0.40 +1.7
3,325,257 + Dsui_3105 0.40 -0.3
3,325,534 - Dsui_3105 0.61 +1.2

Or see this region's nucleotide sequence