Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3103 and Dsui_3104 are separated by 16 nucleotides Dsui_3104 and Dsui_3105 are separated by 54 nucleotides
Dsui_3103: Dsui_3103 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 3,320,958 to 3,322,157
_3103
Dsui_3104: Dsui_3104 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,322,174 to 3,324,675
_3104
Dsui_3105: Dsui_3105 - CBS domain-containing protein, at 3,324,730 to 3,326,046
_3105
Position (kb)
3322
3323
3324
3325 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3321.203 kb on + strand, within Dsui_3103 at 3321.319 kb on - strand, within Dsui_3103 at 3321.337 kb on - strand, within Dsui_3103 at 3321.359 kb on + strand, within Dsui_3103 at 3321.359 kb on + strand, within Dsui_3103 at 3321.372 kb on - strand, within Dsui_3103 at 3321.465 kb on + strand, within Dsui_3103 at 3321.519 kb on - strand, within Dsui_3103 at 3321.643 kb on - strand, within Dsui_3103 at 3321.682 kb on + strand, within Dsui_3103 at 3321.748 kb on + strand, within Dsui_3103 at 3321.796 kb on + strand, within Dsui_3103 at 3321.801 kb on + strand, within Dsui_3103 at 3321.929 kb on + strand, within Dsui_3103 at 3321.956 kb on + strand, within Dsui_3103 at 3322.043 kb on + strand at 3322.127 kb on + strand at 3322.140 kb on - strand at 3322.172 kb on - strand at 3322.209 kb on + strand at 3322.243 kb on + strand at 3322.606 kb on - strand, within Dsui_3104 at 3322.691 kb on + strand, within Dsui_3104 at 3322.699 kb on - strand, within Dsui_3104 at 3322.836 kb on + strand, within Dsui_3104 at 3322.981 kb on - strand, within Dsui_3104 at 3322.984 kb on - strand, within Dsui_3104 at 3323.011 kb on + strand, within Dsui_3104 at 3323.051 kb on - strand, within Dsui_3104 at 3323.123 kb on + strand, within Dsui_3104 at 3323.220 kb on - strand, within Dsui_3104 at 3323.318 kb on - strand, within Dsui_3104 at 3323.341 kb on - strand, within Dsui_3104 at 3323.421 kb on + strand, within Dsui_3104 at 3323.457 kb on + strand, within Dsui_3104 at 3323.500 kb on - strand, within Dsui_3104 at 3323.540 kb on + strand, within Dsui_3104 at 3323.568 kb on + strand, within Dsui_3104 at 3323.568 kb on + strand, within Dsui_3104 at 3323.576 kb on - strand, within Dsui_3104 at 3323.718 kb on + strand, within Dsui_3104 at 3323.726 kb on - strand, within Dsui_3104 at 3323.726 kb on - strand, within Dsui_3104 at 3323.727 kb on + strand, within Dsui_3104 at 3323.749 kb on + strand, within Dsui_3104 at 3323.817 kb on - strand, within Dsui_3104 at 3323.825 kb on - strand, within Dsui_3104 at 3324.226 kb on - strand, within Dsui_3104 at 3324.242 kb on + strand, within Dsui_3104 at 3324.295 kb on - strand, within Dsui_3104 at 3324.302 kb on - strand, within Dsui_3104 at 3324.375 kb on - strand, within Dsui_3104 at 3324.432 kb on + strand at 3324.432 kb on + strand at 3324.440 kb on - strand at 3324.523 kb on - strand at 3324.609 kb on - strand at 3324.700 kb on + strand at 3324.871 kb on - strand, within Dsui_3105 at 3324.943 kb on - strand, within Dsui_3105 at 3325.164 kb on + strand, within Dsui_3105 at 3325.172 kb on - strand, within Dsui_3105 at 3325.175 kb on - strand, within Dsui_3105 at 3325.245 kb on - strand, within Dsui_3105 at 3325.247 kb on + strand, within Dsui_3105 at 3325.255 kb on - strand, within Dsui_3105 at 3325.255 kb on - strand, within Dsui_3105 at 3325.255 kb on - strand, within Dsui_3105 at 3325.257 kb on + strand, within Dsui_3105 at 3325.534 kb on - strand, within Dsui_3105
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 3,321,203 + Dsui_3103 0.20 +0.8 3,321,319 - Dsui_3103 0.30 +1.6 3,321,337 - Dsui_3103 0.32 +1.0 3,321,359 + Dsui_3103 0.33 +1.0 3,321,359 + Dsui_3103 0.33 +0.7 3,321,372 - Dsui_3103 0.34 +0.5 3,321,465 + Dsui_3103 0.42 +0.6 3,321,519 - Dsui_3103 0.47 +1.1 3,321,643 - Dsui_3103 0.57 -1.1 3,321,682 + Dsui_3103 0.60 +0.1 3,321,748 + Dsui_3103 0.66 +0.9 3,321,796 + Dsui_3103 0.70 +0.3 3,321,801 + Dsui_3103 0.70 +0.2 3,321,929 + Dsui_3103 0.81 +0.3 3,321,956 + Dsui_3103 0.83 +1.2 3,322,043 + -0.1 3,322,127 + +0.5 3,322,140 - +0.6 3,322,172 - +2.0 3,322,209 + +0.1 3,322,243 + +0.5 3,322,606 - Dsui_3104 0.17 +1.2 3,322,691 + Dsui_3104 0.21 +1.1 3,322,699 - Dsui_3104 0.21 +0.6 3,322,836 + Dsui_3104 0.26 +1.0 3,322,981 - Dsui_3104 0.32 +0.3 3,322,984 - Dsui_3104 0.32 +1.5 3,323,011 + Dsui_3104 0.33 +1.2 3,323,051 - Dsui_3104 0.35 +0.5 3,323,123 + Dsui_3104 0.38 +1.3 3,323,220 - Dsui_3104 0.42 +0.7 3,323,318 - Dsui_3104 0.46 +0.6 3,323,341 - Dsui_3104 0.47 +1.7 3,323,421 + Dsui_3104 0.50 +1.1 3,323,457 + Dsui_3104 0.51 +1.3 3,323,500 - Dsui_3104 0.53 +0.7 3,323,540 + Dsui_3104 0.55 +1.6 3,323,568 + Dsui_3104 0.56 +1.1 3,323,568 + Dsui_3104 0.56 +1.3 3,323,576 - Dsui_3104 0.56 +0.3 3,323,718 + Dsui_3104 0.62 +1.2 3,323,726 - Dsui_3104 0.62 +1.2 3,323,726 - Dsui_3104 0.62 +0.4 3,323,727 + Dsui_3104 0.62 +1.4 3,323,749 + Dsui_3104 0.63 +1.1 3,323,817 - Dsui_3104 0.66 -1.2 3,323,825 - Dsui_3104 0.66 +0.7 3,324,226 - Dsui_3104 0.82 +1.6 3,324,242 + Dsui_3104 0.83 +1.2 3,324,295 - Dsui_3104 0.85 +1.4 3,324,302 - Dsui_3104 0.85 +2.3 3,324,375 - Dsui_3104 0.88 +1.0 3,324,432 + +1.2 3,324,432 + +0.1 3,324,440 - +0.6 3,324,523 - +1.5 3,324,609 - +1.1 3,324,700 + +0.4 3,324,871 - Dsui_3105 0.11 +0.5 3,324,943 - Dsui_3105 0.16 +1.1 3,325,164 + Dsui_3105 0.33 +0.5 3,325,172 - Dsui_3105 0.34 +1.1 3,325,175 - Dsui_3105 0.34 +0.9 3,325,245 - Dsui_3105 0.39 +0.3 3,325,247 + Dsui_3105 0.39 -1.8 3,325,255 - Dsui_3105 0.40 +1.2 3,325,255 - Dsui_3105 0.40 +0.8 3,325,255 - Dsui_3105 0.40 +1.7 3,325,257 + Dsui_3105 0.40 -0.3 3,325,534 - Dsui_3105 0.61 +1.2
Or see this region's nucleotide sequence