Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2983 and Dsui_2984 are separated by 12 nucleotides Dsui_2984 and Dsui_2985 are separated by 273 nucleotides Dsui_2985 and Dsui_2986 are separated by 19 nucleotides
Dsui_2983: Dsui_2983 - electron transport complex, RnfABCDGE type, G subunit, at 3,189,934 to 3,190,611
_2983
Dsui_2984: Dsui_2984 - electron transport complex, RnfABCDGE type, E subunit, at 3,190,624 to 3,191,313
_2984
Dsui_2985: Dsui_2985 - endonuclease III, at 3,191,587 to 3,192,237
_2985
Dsui_2986: Dsui_2986 - hypothetical protein, at 3,192,257 to 3,193,336
_2986
Position (kb)
3191
3192
3193 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3190.590 kb on + strand at 3190.910 kb on + strand, within Dsui_2984 at 3191.282 kb on - strand at 3191.292 kb on + strand at 3191.319 kb on + strand at 3191.379 kb on - strand at 3191.391 kb on + strand at 3191.517 kb on - strand at 3191.519 kb on + strand at 3191.519 kb on - strand at 3191.577 kb on + strand at 3191.585 kb on - strand at 3191.697 kb on + strand, within Dsui_2985 at 3191.727 kb on + strand, within Dsui_2985 at 3191.735 kb on - strand, within Dsui_2985 at 3191.742 kb on - strand, within Dsui_2985 at 3192.065 kb on + strand, within Dsui_2985 at 3192.075 kb on + strand, within Dsui_2985 at 3192.114 kb on + strand, within Dsui_2985 at 3192.142 kb on - strand, within Dsui_2985 at 3192.143 kb on + strand, within Dsui_2985 at 3192.201 kb on - strand at 3192.213 kb on - strand at 3192.223 kb on - strand at 3192.226 kb on + strand at 3192.231 kb on + strand at 3192.231 kb on + strand at 3192.231 kb on + strand at 3192.231 kb on + strand at 3192.239 kb on - strand at 3192.239 kb on - strand at 3192.239 kb on - strand at 3192.301 kb on - strand at 3192.379 kb on + strand, within Dsui_2986 at 3192.382 kb on - strand, within Dsui_2986 at 3192.450 kb on + strand, within Dsui_2986 at 3192.487 kb on - strand, within Dsui_2986 at 3192.496 kb on + strand, within Dsui_2986 at 3192.717 kb on - strand at 3192.884 kb on - strand at 3192.924 kb on - strand at 3192.947 kb on + strand, within Dsui_2986 at 3192.955 kb on - strand at 3192.956 kb on - strand at 3192.965 kb on - strand at 3192.972 kb on + strand, within Dsui_2986 at 3193.048 kb on + strand, within Dsui_2986 at 3193.119 kb on + strand, within Dsui_2986 at 3193.140 kb on + strand, within Dsui_2986 at 3193.153 kb on - strand, within Dsui_2986
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 3,190,590 + +0.1 3,190,910 + Dsui_2984 0.41 -0.2 3,191,282 - +0.1 3,191,292 + -0.6 3,191,319 + -0.2 3,191,379 - +0.6 3,191,391 + -0.9 3,191,517 - +0.8 3,191,519 + -0.1 3,191,519 - -0.0 3,191,577 + +0.4 3,191,585 - -0.4 3,191,697 + Dsui_2985 0.17 -0.2 3,191,727 + Dsui_2985 0.22 -0.2 3,191,735 - Dsui_2985 0.23 +0.1 3,191,742 - Dsui_2985 0.24 -0.3 3,192,065 + Dsui_2985 0.73 +0.5 3,192,075 + Dsui_2985 0.75 +1.3 3,192,114 + Dsui_2985 0.81 +0.8 3,192,142 - Dsui_2985 0.85 +1.3 3,192,143 + Dsui_2985 0.85 +0.3 3,192,201 - -0.0 3,192,213 - +0.6 3,192,223 - +0.1 3,192,226 + +0.6 3,192,231 + +0.3 3,192,231 + +0.3 3,192,231 + +0.0 3,192,231 + +0.2 3,192,239 - -3.4 3,192,239 - -0.4 3,192,239 - +0.6 3,192,301 - -0.0 3,192,379 + Dsui_2986 0.11 +0.3 3,192,382 - Dsui_2986 0.12 -1.0 3,192,450 + Dsui_2986 0.18 +0.7 3,192,487 - Dsui_2986 0.21 -1.3 3,192,496 + Dsui_2986 0.22 +0.6 3,192,717 - +1.6 3,192,884 - +0.6 3,192,924 - +1.6 3,192,947 + Dsui_2986 0.64 -0.1 3,192,955 - +2.6 3,192,956 - +0.6 3,192,965 - +0.6 3,192,972 + Dsui_2986 0.66 +1.1 3,193,048 + Dsui_2986 0.73 -0.6 3,193,119 + Dsui_2986 0.80 +0.6 3,193,140 + Dsui_2986 0.82 +0.2 3,193,153 - Dsui_2986 0.83 -0.1
Or see this region's nucleotide sequence