Strain Fitness in Dechlorosoma suillum PS around Dsui_2703

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2702 and Dsui_2703 are separated by 22 nucleotidesDsui_2703 and Dsui_2704 are separated by 448 nucleotides Dsui_2702: Dsui_2702 - cell division protein, at 2,855,500 to 2,856,933 _2702 Dsui_2703: Dsui_2703 - chromosome segregation protein SMC, at 2,856,956 to 2,860,465 _2703 Dsui_2704: Dsui_2704 - yecA family protein, at 2,860,914 to 2,861,612 _2704 Position (kb) 2856 2857 2858 2859 2860 2861Strain fitness (log2 ratio) -2 -1 0 1 2at 2856.054 kb on - strand, within Dsui_2702at 2856.466 kb on - strand, within Dsui_2702at 2856.754 kb on - strand, within Dsui_2702at 2856.763 kb on - strand, within Dsui_2702at 2856.970 kb on - strandat 2857.127 kb on - strandat 2857.140 kb on - strandat 2857.165 kb on - strandat 2857.186 kb on + strandat 2857.208 kb on - strandat 2857.265 kb on - strandat 2857.498 kb on - strand, within Dsui_2703at 2857.614 kb on - strand, within Dsui_2703at 2857.638 kb on - strand, within Dsui_2703at 2857.934 kb on - strand, within Dsui_2703at 2858.164 kb on - strand, within Dsui_2703at 2858.377 kb on - strand, within Dsui_2703at 2858.669 kb on - strand, within Dsui_2703at 2859.854 kb on - strand, within Dsui_2703at 2860.028 kb on - strand, within Dsui_2703at 2860.028 kb on - strand, within Dsui_2703at 2860.484 kb on - strandat 2860.598 kb on - strandat 2860.648 kb on + strandat 2860.899 kb on + strandat 2860.907 kb on - strandat 2860.950 kb on + strandat 2861.079 kb on + strand, within Dsui_2704at 2861.093 kb on - strandat 2861.404 kb on + strand, within Dsui_2704at 2861.426 kb on + strand, within Dsui_2704

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
2,856,054 - Dsui_2702 0.39 -2.5
2,856,466 - Dsui_2702 0.67 +0.1
2,856,754 - Dsui_2702 0.87 -2.2
2,856,763 - Dsui_2702 0.88 +0.3
2,856,970 - +0.1
2,857,127 - +0.1
2,857,140 - -0.9
2,857,165 - -1.3
2,857,186 + +0.1
2,857,208 - -1.3
2,857,265 - -1.7
2,857,498 - Dsui_2703 0.15 -0.9
2,857,614 - Dsui_2703 0.19 -0.9
2,857,638 - Dsui_2703 0.19 +1.1
2,857,934 - Dsui_2703 0.28 -0.3
2,858,164 - Dsui_2703 0.34 -1.1
2,858,377 - Dsui_2703 0.40 -1.5
2,858,669 - Dsui_2703 0.49 -1.3
2,859,854 - Dsui_2703 0.83 -0.5
2,860,028 - Dsui_2703 0.88 -2.5
2,860,028 - Dsui_2703 0.88 -0.3
2,860,484 - -0.2
2,860,598 - +0.3
2,860,648 + +0.1
2,860,899 + +0.6
2,860,907 - +2.3
2,860,950 + +1.2
2,861,079 + Dsui_2704 0.24 +1.3
2,861,093 - +1.7
2,861,404 + Dsui_2704 0.70 +0.7
2,861,426 + Dsui_2704 0.73 +1.0

Or see this region's nucleotide sequence