Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2546 and Dsui_2547 are separated by 250 nucleotides Dsui_2547 and Dsui_2548 are separated by 58 nucleotides Dsui_2548 and Dsui_2549 are separated by 40 nucleotides
Dsui_2546: Dsui_2546 - transcriptional accessory protein, at 2,696,784 to 2,699,099
_2546
Dsui_2547: Dsui_2547 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,699,350 to 2,702,019
_2547
Dsui_2548: Dsui_2548 - hypothetical protein, at 2,702,078 to 2,702,518
_2548
Dsui_2549: Dsui_2549 - hypothetical protein, at 2,702,559 to 2,702,996
_2549
Position (kb)
2699
2700
2701
2702
2703 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2698.378 kb on - strand, within Dsui_2546 at 2698.378 kb on - strand, within Dsui_2546 at 2698.378 kb on - strand, within Dsui_2546 at 2698.402 kb on - strand, within Dsui_2546 at 2698.621 kb on - strand, within Dsui_2546 at 2698.633 kb on + strand, within Dsui_2546 at 2698.633 kb on + strand, within Dsui_2546 at 2698.633 kb on + strand, within Dsui_2546 at 2698.641 kb on - strand, within Dsui_2546 at 2698.641 kb on - strand, within Dsui_2546 at 2698.641 kb on - strand, within Dsui_2546 at 2698.761 kb on - strand, within Dsui_2546 at 2698.790 kb on + strand, within Dsui_2546 at 2698.954 kb on - strand at 2699.043 kb on - strand at 2699.094 kb on - strand at 2699.207 kb on + strand at 2699.347 kb on + strand at 2699.421 kb on + strand at 2699.446 kb on - strand at 2699.446 kb on - strand at 2699.446 kb on - strand at 2699.456 kb on - strand at 2699.474 kb on + strand at 2699.510 kb on + strand at 2699.549 kb on + strand at 2699.600 kb on - strand at 2699.624 kb on + strand, within Dsui_2547 at 2699.634 kb on + strand, within Dsui_2547 at 2699.669 kb on + strand, within Dsui_2547 at 2699.821 kb on + strand, within Dsui_2547 at 2699.846 kb on + strand, within Dsui_2547 at 2699.859 kb on + strand, within Dsui_2547 at 2699.882 kb on + strand, within Dsui_2547 at 2699.886 kb on + strand, within Dsui_2547 at 2699.886 kb on + strand, within Dsui_2547 at 2699.887 kb on + strand, within Dsui_2547 at 2699.890 kb on - strand, within Dsui_2547 at 2699.897 kb on + strand, within Dsui_2547 at 2699.939 kb on + strand, within Dsui_2547 at 2700.021 kb on + strand, within Dsui_2547 at 2700.022 kb on + strand, within Dsui_2547 at 2700.167 kb on + strand, within Dsui_2547 at 2700.189 kb on + strand, within Dsui_2547 at 2700.235 kb on + strand, within Dsui_2547 at 2700.235 kb on + strand, within Dsui_2547 at 2700.235 kb on + strand, within Dsui_2547 at 2700.243 kb on - strand, within Dsui_2547 at 2700.256 kb on + strand, within Dsui_2547 at 2700.383 kb on + strand, within Dsui_2547 at 2700.418 kb on + strand, within Dsui_2547 at 2700.436 kb on - strand, within Dsui_2547 at 2700.522 kb on + strand, within Dsui_2547 at 2700.529 kb on + strand, within Dsui_2547 at 2700.599 kb on + strand, within Dsui_2547 at 2700.607 kb on - strand, within Dsui_2547 at 2700.634 kb on - strand, within Dsui_2547 at 2700.837 kb on - strand, within Dsui_2547 at 2700.886 kb on - strand, within Dsui_2547 at 2700.928 kb on - strand at 2700.928 kb on - strand, within Dsui_2547 at 2700.938 kb on + strand, within Dsui_2547 at 2700.945 kb on - strand, within Dsui_2547 at 2700.946 kb on - strand, within Dsui_2547 at 2701.254 kb on + strand, within Dsui_2547 at 2701.358 kb on + strand, within Dsui_2547 at 2701.372 kb on - strand, within Dsui_2547 at 2701.415 kb on + strand, within Dsui_2547 at 2701.476 kb on + strand, within Dsui_2547 at 2701.489 kb on - strand, within Dsui_2547 at 2701.553 kb on + strand, within Dsui_2547 at 2701.553 kb on + strand, within Dsui_2547 at 2701.561 kb on - strand, within Dsui_2547 at 2701.561 kb on - strand, within Dsui_2547 at 2701.657 kb on + strand, within Dsui_2547 at 2701.687 kb on + strand, within Dsui_2547 at 2701.758 kb on + strand at 2701.758 kb on + strand at 2701.766 kb on - strand at 2701.778 kb on - strand at 2701.901 kb on + strand at 2701.927 kb on + strand at 2701.935 kb on - strand at 2702.076 kb on - strand at 2702.206 kb on - strand, within Dsui_2548 at 2702.225 kb on - strand, within Dsui_2548 at 2702.252 kb on + strand, within Dsui_2548 at 2702.387 kb on + strand, within Dsui_2548 at 2702.445 kb on - strand, within Dsui_2548 at 2702.646 kb on + strand, within Dsui_2549 at 2702.749 kb on + strand, within Dsui_2549 at 2702.803 kb on - strand, within Dsui_2549 at 2702.804 kb on - strand, within Dsui_2549 at 2702.830 kb on + strand, within Dsui_2549 at 2702.830 kb on + strand at 2702.830 kb on + strand, within Dsui_2549 at 2702.835 kb on - strand, within Dsui_2549 at 2702.838 kb on - strand, within Dsui_2549 at 2702.838 kb on - strand, within Dsui_2549 at 2702.838 kb on - strand, within Dsui_2549 at 2702.838 kb on - strand, within Dsui_2549 at 2702.882 kb on - strand, within Dsui_2549 at 2702.915 kb on + strand, within Dsui_2549 at 2702.979 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,698,378 - Dsui_2546 0.69 -0.4 2,698,378 - Dsui_2546 0.69 -0.2 2,698,378 - Dsui_2546 0.69 -0.3 2,698,402 - Dsui_2546 0.70 -0.7 2,698,621 - Dsui_2546 0.79 -0.5 2,698,633 + Dsui_2546 0.80 -1.6 2,698,633 + Dsui_2546 0.80 -0.9 2,698,633 + Dsui_2546 0.80 -0.6 2,698,641 - Dsui_2546 0.80 +0.0 2,698,641 - Dsui_2546 0.80 -0.4 2,698,641 - Dsui_2546 0.80 -0.1 2,698,761 - Dsui_2546 0.85 +0.5 2,698,790 + Dsui_2546 0.87 +0.1 2,698,954 - -0.2 2,699,043 - +0.0 2,699,094 - +0.4 2,699,207 + -0.9 2,699,347 + -0.6 2,699,421 + +0.5 2,699,446 - -0.7 2,699,446 - -0.9 2,699,446 - +0.7 2,699,456 - +2.3 2,699,474 + +1.4 2,699,510 + +0.8 2,699,549 + +0.7 2,699,600 - +1.1 2,699,624 + Dsui_2547 0.10 +0.7 2,699,634 + Dsui_2547 0.11 +0.9 2,699,669 + Dsui_2547 0.12 +0.5 2,699,821 + Dsui_2547 0.18 +0.8 2,699,846 + Dsui_2547 0.19 +0.9 2,699,859 + Dsui_2547 0.19 +2.0 2,699,882 + Dsui_2547 0.20 +1.0 2,699,886 + Dsui_2547 0.20 +1.0 2,699,886 + Dsui_2547 0.20 +0.9 2,699,887 + Dsui_2547 0.20 +1.1 2,699,890 - Dsui_2547 0.20 -0.1 2,699,897 + Dsui_2547 0.20 +0.2 2,699,939 + Dsui_2547 0.22 +0.8 2,700,021 + Dsui_2547 0.25 +1.3 2,700,022 + Dsui_2547 0.25 +0.8 2,700,167 + Dsui_2547 0.31 +0.1 2,700,189 + Dsui_2547 0.31 +0.5 2,700,235 + Dsui_2547 0.33 +0.8 2,700,235 + Dsui_2547 0.33 -0.7 2,700,235 + Dsui_2547 0.33 +0.8 2,700,243 - Dsui_2547 0.33 +0.5 2,700,256 + Dsui_2547 0.34 +0.7 2,700,383 + Dsui_2547 0.39 +0.8 2,700,418 + Dsui_2547 0.40 +0.9 2,700,436 - Dsui_2547 0.41 +0.4 2,700,522 + Dsui_2547 0.44 +0.0 2,700,529 + Dsui_2547 0.44 +1.0 2,700,599 + Dsui_2547 0.47 +1.2 2,700,607 - Dsui_2547 0.47 +2.2 2,700,634 - Dsui_2547 0.48 +0.7 2,700,837 - Dsui_2547 0.56 +1.2 2,700,886 - Dsui_2547 0.58 +0.2 2,700,928 - +0.9 2,700,928 - Dsui_2547 0.59 +0.1 2,700,938 + Dsui_2547 0.59 +0.7 2,700,945 - Dsui_2547 0.60 +0.4 2,700,946 - Dsui_2547 0.60 +1.2 2,701,254 + Dsui_2547 0.71 -0.3 2,701,358 + Dsui_2547 0.75 +0.6 2,701,372 - Dsui_2547 0.76 -0.2 2,701,415 + Dsui_2547 0.77 +0.8 2,701,476 + Dsui_2547 0.80 +0.4 2,701,489 - Dsui_2547 0.80 +0.4 2,701,553 + Dsui_2547 0.83 +0.6 2,701,553 + Dsui_2547 0.83 +0.7 2,701,561 - Dsui_2547 0.83 +0.7 2,701,561 - Dsui_2547 0.83 -1.3 2,701,657 + Dsui_2547 0.86 +0.7 2,701,687 + Dsui_2547 0.88 +0.4 2,701,758 + +0.4 2,701,758 + +0.2 2,701,766 - +0.7 2,701,778 - +0.5 2,701,901 + +0.7 2,701,927 + +1.0 2,701,935 - +0.0 2,702,076 - +0.5 2,702,206 - Dsui_2548 0.29 +0.3 2,702,225 - Dsui_2548 0.33 +0.3 2,702,252 + Dsui_2548 0.39 +0.5 2,702,387 + Dsui_2548 0.70 +0.3 2,702,445 - Dsui_2548 0.83 -0.1 2,702,646 + Dsui_2549 0.20 -0.1 2,702,749 + Dsui_2549 0.43 -0.2 2,702,803 - Dsui_2549 0.56 -0.7 2,702,804 - Dsui_2549 0.56 -0.8 2,702,830 + Dsui_2549 0.62 -2.1 2,702,830 + -0.3 2,702,830 + Dsui_2549 0.62 -1.4 2,702,835 - Dsui_2549 0.63 -1.2 2,702,838 - Dsui_2549 0.64 -0.9 2,702,838 - Dsui_2549 0.64 -0.1 2,702,838 - Dsui_2549 0.64 -0.3 2,702,838 - Dsui_2549 0.64 -0.7 2,702,882 - Dsui_2549 0.74 +0.0 2,702,915 + Dsui_2549 0.81 -0.8 2,702,979 + +1.1
Or see this region's nucleotide sequence