Strain Fitness in Dechlorosoma suillum PS around Dsui_2464

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2462 and Dsui_2463 are separated by 67 nucleotidesDsui_2463 and Dsui_2464 are separated by 158 nucleotidesDsui_2464 and Dsui_2465 overlap by 4 nucleotides Dsui_2462: Dsui_2462 - DNA repair protein RecO, at 2,619,644 to 2,620,357 _2462 Dsui_2463: Dsui_2463 - pyridoxine 5''-phosphate synthase, at 2,620,425 to 2,621,177 _2463 Dsui_2464: Dsui_2464 - holo-(acyl-carrier-protein) synthase, at 2,621,336 to 2,621,725 _2464 Dsui_2465: Dsui_2465 - beta-glucosidase-like glycosyl hydrolase, at 2,621,722 to 2,622,747 _2465 Position (kb) 2621 2622Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2621.187 kb on - strandat 2621.188 kb on + strandat 2621.211 kb on + strandat 2621.211 kb on + strandat 2621.246 kb on + strandat 2621.258 kb on + strandat 2621.258 kb on + strandat 2621.258 kb on + strandat 2621.258 kb on + strandat 2621.258 kb on + strandat 2621.266 kb on - strandat 2621.266 kb on - strandat 2621.266 kb on - strandat 2621.267 kb on + strandat 2621.316 kb on - strandat 2621.778 kb on + strandat 2621.803 kb on + strandat 2621.811 kb on - strandat 2621.828 kb on + strand, within Dsui_2465at 2621.868 kb on + strand, within Dsui_2465at 2621.897 kb on - strand, within Dsui_2465at 2621.897 kb on - strandat 2621.897 kb on - strand, within Dsui_2465at 2622.046 kb on + strand, within Dsui_2465at 2622.053 kb on - strandat 2622.209 kb on + strand, within Dsui_2465at 2622.209 kb on + strandat 2622.272 kb on - strand, within Dsui_2465at 2622.273 kb on - strand, within Dsui_2465at 2622.520 kb on - strand, within Dsui_2465at 2622.536 kb on - strand, within Dsui_2465

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,621,187 - +1.7
2,621,188 + +0.8
2,621,211 + -0.1
2,621,211 + -0.3
2,621,246 + -0.4
2,621,258 + +0.2
2,621,258 + +0.2
2,621,258 + -0.1
2,621,258 + -2.3
2,621,258 + -0.6
2,621,266 - +0.1
2,621,266 - -0.3
2,621,266 - +1.3
2,621,267 + -0.1
2,621,316 - -0.6
2,621,778 + +1.2
2,621,803 + +0.6
2,621,811 - +0.0
2,621,828 + Dsui_2465 0.10 +1.3
2,621,868 + Dsui_2465 0.14 +0.7
2,621,897 - Dsui_2465 0.17 +0.1
2,621,897 - +0.4
2,621,897 - Dsui_2465 0.17 +0.3
2,622,046 + Dsui_2465 0.32 +1.0
2,622,053 - +2.0
2,622,209 + Dsui_2465 0.47 +1.7
2,622,209 + +3.1
2,622,272 - Dsui_2465 0.54 -0.8
2,622,273 - Dsui_2465 0.54 +0.7
2,622,520 - Dsui_2465 0.78 -0.7
2,622,536 - Dsui_2465 0.79 -1.6

Or see this region's nucleotide sequence