Strain Fitness in Dechlorosoma suillum PS around Dsui_2286

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2285 and Dsui_2286 are separated by 26 nucleotidesDsui_2286 and Dsui_2287 are separated by 157 nucleotides Dsui_2285: Dsui_2285 - hypothetical protein, at 2,438,199 to 2,439,014 _2285 Dsui_2286: Dsui_2286 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,439,041 to 2,439,835 _2286 Dsui_2287: Dsui_2287 - aminopeptidase N, at 2,439,993 to 2,442,602 _2287 Position (kb) 2439 2440Strain fitness (log2 ratio) -2 -1 0 1at 2438.063 kb on + strandat 2438.081 kb on + strandat 2438.081 kb on + strandat 2438.081 kb on + strandat 2438.081 kb on + strandat 2438.086 kb on + strandat 2438.089 kb on - strandat 2438.089 kb on - strandat 2438.089 kb on - strandat 2438.089 kb on - strandat 2438.089 kb on - strandat 2438.089 kb on - strandat 2438.089 kb on - strandat 2438.089 kb on - strandat 2438.099 kb on + strandat 2438.127 kb on - strandat 2438.148 kb on + strandat 2438.166 kb on - strandat 2438.176 kb on - strandat 2438.188 kb on - strandat 2438.209 kb on - strandat 2438.221 kb on + strandat 2438.236 kb on - strandat 2438.236 kb on - strandat 2438.420 kb on + strand, within Dsui_2285at 2438.428 kb on - strand, within Dsui_2285at 2438.428 kb on - strand, within Dsui_2285at 2438.457 kb on - strandat 2438.488 kb on - strand, within Dsui_2285at 2438.523 kb on - strand, within Dsui_2285at 2438.581 kb on - strand, within Dsui_2285at 2438.595 kb on + strand, within Dsui_2285at 2438.603 kb on - strandat 2438.704 kb on + strand, within Dsui_2285at 2438.754 kb on + strand, within Dsui_2285at 2438.756 kb on - strand, within Dsui_2285at 2438.759 kb on + strand, within Dsui_2285at 2438.762 kb on - strand, within Dsui_2285at 2438.762 kb on - strand, within Dsui_2285at 2438.766 kb on - strand, within Dsui_2285at 2438.835 kb on + strand, within Dsui_2285at 2438.848 kb on - strand, within Dsui_2285at 2438.849 kb on - strand, within Dsui_2285at 2438.972 kb on + strandat 2438.990 kb on + strandat 2439.087 kb on - strandat 2439.181 kb on - strand, within Dsui_2286at 2439.197 kb on - strand, within Dsui_2286at 2439.212 kb on - strand, within Dsui_2286at 2439.388 kb on + strandat 2439.483 kb on - strandat 2439.542 kb on + strandat 2439.595 kb on + strand, within Dsui_2286at 2439.837 kb on - strandat 2439.924 kb on + strandat 2439.924 kb on + strandat 2440.015 kb on + strandat 2440.028 kb on + strandat 2440.037 kb on - strandat 2440.068 kb on - strandat 2440.110 kb on + strandat 2440.233 kb on + strandat 2440.255 kb on + strand, within Dsui_2287at 2440.255 kb on + strand, within Dsui_2287at 2440.263 kb on - strand, within Dsui_2287at 2440.354 kb on + strand, within Dsui_2287at 2440.432 kb on + strand, within Dsui_2287at 2440.481 kb on + strand, within Dsui_2287at 2440.515 kb on - strand, within Dsui_2287at 2440.534 kb on + strand, within Dsui_2287at 2440.614 kb on - strand, within Dsui_2287

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,438,063 + -1.8
2,438,081 + -0.8
2,438,081 + -0.0
2,438,081 + +0.6
2,438,081 + -0.5
2,438,086 + +1.2
2,438,089 - -1.3
2,438,089 - -2.2
2,438,089 - -0.1
2,438,089 - +0.4
2,438,089 - +0.3
2,438,089 - -0.5
2,438,089 - -0.4
2,438,089 - -1.2
2,438,099 + +1.6
2,438,127 - -2.0
2,438,148 + +0.0
2,438,166 - -1.7
2,438,176 - -0.1
2,438,188 - +0.4
2,438,209 - +0.9
2,438,221 + +1.6
2,438,236 - +0.7
2,438,236 - +0.1
2,438,420 + Dsui_2285 0.27 +0.0
2,438,428 - Dsui_2285 0.28 +0.0
2,438,428 - Dsui_2285 0.28 +1.6
2,438,457 - -1.5
2,438,488 - Dsui_2285 0.35 -0.3
2,438,523 - Dsui_2285 0.40 +0.7
2,438,581 - Dsui_2285 0.47 -0.2
2,438,595 + Dsui_2285 0.49 +0.9
2,438,603 - +0.0
2,438,704 + Dsui_2285 0.62 -0.2
2,438,754 + Dsui_2285 0.68 -0.5
2,438,756 - Dsui_2285 0.68 -0.5
2,438,759 + Dsui_2285 0.69 +0.7
2,438,762 - Dsui_2285 0.69 -0.6
2,438,762 - Dsui_2285 0.69 -0.4
2,438,766 - Dsui_2285 0.69 -0.7
2,438,835 + Dsui_2285 0.78 +0.4
2,438,848 - Dsui_2285 0.80 -0.7
2,438,849 - Dsui_2285 0.80 -1.7
2,438,972 + +0.0
2,438,990 + +0.4
2,439,087 - -1.8
2,439,181 - Dsui_2286 0.18 -0.8
2,439,197 - Dsui_2286 0.20 -1.5
2,439,212 - Dsui_2286 0.22 -0.4
2,439,388 + +0.6
2,439,483 - +0.0
2,439,542 + +0.2
2,439,595 + Dsui_2286 0.70 +0.0
2,439,837 - -1.2
2,439,924 + +0.4
2,439,924 + -1.4
2,440,015 + +0.0
2,440,028 + +0.3
2,440,037 - +0.0
2,440,068 - +1.0
2,440,110 + +0.5
2,440,233 + +0.3
2,440,255 + Dsui_2287 0.10 +0.8
2,440,255 + Dsui_2287 0.10 +0.4
2,440,263 - Dsui_2287 0.10 -0.6
2,440,354 + Dsui_2287 0.14 -0.4
2,440,432 + Dsui_2287 0.17 +0.4
2,440,481 + Dsui_2287 0.19 +0.6
2,440,515 - Dsui_2287 0.20 -2.3
2,440,534 + Dsui_2287 0.21 -0.7
2,440,614 - Dsui_2287 0.24 -0.4

Or see this region's nucleotide sequence