Strain Fitness in Dechlorosoma suillum PS around Dsui_1996

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1995 and Dsui_1996 are separated by 67 nucleotidesDsui_1996 and Dsui_1997 are separated by 22 nucleotidesDsui_1997 and Dsui_1998 are separated by 77 nucleotides Dsui_1995: Dsui_1995 - transglutaminase-like enzyme, predicted cysteine protease, at 2,102,394 to 2,103,605 _1995 Dsui_1996: Dsui_1996 - PhoH family protein, at 2,103,673 to 2,105,115 _1996 Dsui_1997: Dsui_1997 - Peroxiredoxin, at 2,105,138 to 2,105,611 _1997 Dsui_1998: Dsui_1998 - glutamate racemase, at 2,105,689 to 2,106,474 _1998 Position (kb) 2103 2104 2105 2106Strain fitness (log2 ratio) -1 0 1 2at 2102.923 kb on + strandat 2102.935 kb on - strand, within Dsui_1995at 2102.942 kb on - strand, within Dsui_1995at 2102.945 kb on + strand, within Dsui_1995at 2102.965 kb on + strand, within Dsui_1995at 2103.091 kb on + strandat 2103.178 kb on - strand, within Dsui_1995at 2103.180 kb on + strandat 2103.257 kb on - strand, within Dsui_1995at 2103.313 kb on - strand, within Dsui_1995at 2103.345 kb on + strand, within Dsui_1995at 2103.468 kb on - strand, within Dsui_1995at 2103.502 kb on - strandat 2103.506 kb on + strandat 2103.638 kb on + strandat 2103.645 kb on + strandat 2103.696 kb on - strandat 2103.753 kb on - strandat 2103.776 kb on - strandat 2103.788 kb on - strandat 2103.788 kb on - strandat 2103.788 kb on - strandat 2103.805 kb on - strandat 2103.921 kb on + strand, within Dsui_1996at 2103.998 kb on - strand, within Dsui_1996at 2104.145 kb on - strand, within Dsui_1996at 2104.155 kb on - strand, within Dsui_1996at 2104.224 kb on - strand, within Dsui_1996at 2104.226 kb on + strand, within Dsui_1996at 2104.236 kb on + strand, within Dsui_1996at 2104.341 kb on + strand, within Dsui_1996at 2104.349 kb on - strand, within Dsui_1996at 2104.395 kb on + strand, within Dsui_1996at 2104.407 kb on - strand, within Dsui_1996at 2104.446 kb on + strandat 2104.514 kb on - strand, within Dsui_1996at 2104.516 kb on - strand, within Dsui_1996at 2104.562 kb on + strand, within Dsui_1996at 2104.562 kb on + strandat 2104.562 kb on + strandat 2104.562 kb on + strand, within Dsui_1996at 2104.570 kb on - strand, within Dsui_1996at 2104.570 kb on - strand, within Dsui_1996at 2104.570 kb on - strand, within Dsui_1996at 2104.628 kb on - strand, within Dsui_1996at 2104.636 kb on - strand, within Dsui_1996at 2104.727 kb on - strand, within Dsui_1996at 2104.742 kb on - strand, within Dsui_1996at 2104.742 kb on - strand, within Dsui_1996at 2104.751 kb on + strand, within Dsui_1996at 2104.751 kb on + strand, within Dsui_1996at 2104.759 kb on - strand, within Dsui_1996at 2104.759 kb on - strand, within Dsui_1996at 2104.872 kb on - strand, within Dsui_1996at 2104.875 kb on + strandat 2104.881 kb on + strand, within Dsui_1996at 2104.881 kb on + strand, within Dsui_1996at 2104.881 kb on + strand, within Dsui_1996at 2104.889 kb on - strand, within Dsui_1996at 2104.894 kb on - strand, within Dsui_1996at 2104.956 kb on - strand, within Dsui_1996at 2105.010 kb on - strandat 2105.090 kb on - strandat 2105.144 kb on - strandat 2105.144 kb on - strandat 2105.144 kb on - strandat 2105.248 kb on + strandat 2105.253 kb on + strandat 2105.253 kb on + strandat 2105.255 kb on + strandat 2105.261 kb on - strand, within Dsui_1997at 2105.261 kb on - strand, within Dsui_1997at 2105.314 kb on - strand, within Dsui_1997at 2105.396 kb on - strandat 2105.541 kb on - strand, within Dsui_1997at 2105.611 kb on + strandat 2105.661 kb on + strandat 2105.661 kb on + strandat 2105.687 kb on + strandat 2105.687 kb on + strandat 2105.687 kb on + strandat 2105.695 kb on - strandat 2105.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,102,923 + +1.4
2,102,935 - Dsui_1995 0.45 +1.2
2,102,942 - Dsui_1995 0.45 +0.3
2,102,945 + Dsui_1995 0.45 +0.7
2,102,965 + Dsui_1995 0.47 +1.1
2,103,091 + +0.7
2,103,178 - Dsui_1995 0.65 +1.0
2,103,180 + +1.1
2,103,257 - Dsui_1995 0.71 +0.3
2,103,313 - Dsui_1995 0.76 +0.3
2,103,345 + Dsui_1995 0.78 +0.2
2,103,468 - Dsui_1995 0.89 -0.5
2,103,502 - -0.3
2,103,506 + +2.2
2,103,638 + +0.6
2,103,645 + +0.5
2,103,696 - -0.4
2,103,753 - +0.9
2,103,776 - +0.6
2,103,788 - +0.1
2,103,788 - +0.7
2,103,788 - -0.1
2,103,805 - +1.1
2,103,921 + Dsui_1996 0.17 -0.2
2,103,998 - Dsui_1996 0.23 +1.2
2,104,145 - Dsui_1996 0.33 +0.2
2,104,155 - Dsui_1996 0.33 +0.6
2,104,224 - Dsui_1996 0.38 +0.3
2,104,226 + Dsui_1996 0.38 +0.8
2,104,236 + Dsui_1996 0.39 +0.7
2,104,341 + Dsui_1996 0.46 -0.3
2,104,349 - Dsui_1996 0.47 +0.9
2,104,395 + Dsui_1996 0.50 -0.1
2,104,407 - Dsui_1996 0.51 +0.7
2,104,446 + +0.1
2,104,514 - Dsui_1996 0.58 +0.3
2,104,516 - Dsui_1996 0.58 +0.5
2,104,562 + Dsui_1996 0.62 +0.5
2,104,562 + +0.7
2,104,562 + +1.2
2,104,562 + Dsui_1996 0.62 -0.3
2,104,570 - Dsui_1996 0.62 +1.1
2,104,570 - Dsui_1996 0.62 +0.8
2,104,570 - Dsui_1996 0.62 +0.7
2,104,628 - Dsui_1996 0.66 +0.4
2,104,636 - Dsui_1996 0.67 +1.2
2,104,727 - Dsui_1996 0.73 +1.0
2,104,742 - Dsui_1996 0.74 +1.2
2,104,742 - Dsui_1996 0.74 +0.3
2,104,751 + Dsui_1996 0.75 +0.0
2,104,751 + Dsui_1996 0.75 +1.1
2,104,759 - Dsui_1996 0.75 +0.6
2,104,759 - Dsui_1996 0.75 -1.4
2,104,872 - Dsui_1996 0.83 +0.6
2,104,875 + -0.1
2,104,881 + Dsui_1996 0.84 +0.9
2,104,881 + Dsui_1996 0.84 +0.7
2,104,881 + Dsui_1996 0.84 -0.2
2,104,889 - Dsui_1996 0.84 +0.7
2,104,894 - Dsui_1996 0.85 +0.2
2,104,956 - Dsui_1996 0.89 +0.0
2,105,010 - +0.2
2,105,090 - +0.8
2,105,144 - +0.5
2,105,144 - +0.5
2,105,144 - +0.5
2,105,248 + +1.2
2,105,253 + +0.1
2,105,253 + +1.7
2,105,255 + +1.1
2,105,261 - Dsui_1997 0.26 +0.1
2,105,261 - Dsui_1997 0.26 +0.1
2,105,314 - Dsui_1997 0.37 +1.3
2,105,396 - -0.3
2,105,541 - Dsui_1997 0.85 -0.0
2,105,611 + +1.7
2,105,661 + +0.7
2,105,661 + +0.1
2,105,687 + +1.7
2,105,687 + +0.1
2,105,687 + +0.9
2,105,695 - +0.7
2,105,706 - -1.7

Or see this region's nucleotide sequence