Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1995 and Dsui_1996 are separated by 67 nucleotides Dsui_1996 and Dsui_1997 are separated by 22 nucleotides Dsui_1997 and Dsui_1998 are separated by 77 nucleotides
Dsui_1995: Dsui_1995 - transglutaminase-like enzyme, predicted cysteine protease, at 2,102,394 to 2,103,605
_1995
Dsui_1996: Dsui_1996 - PhoH family protein, at 2,103,673 to 2,105,115
_1996
Dsui_1997: Dsui_1997 - Peroxiredoxin, at 2,105,138 to 2,105,611
_1997
Dsui_1998: Dsui_1998 - glutamate racemase, at 2,105,689 to 2,106,474
_1998
Position (kb)
2103
2104
2105
2106 Strain fitness (log2 ratio)
-1
0
1
2 at 2102.923 kb on + strand at 2102.935 kb on - strand, within Dsui_1995 at 2102.942 kb on - strand, within Dsui_1995 at 2102.945 kb on + strand, within Dsui_1995 at 2102.965 kb on + strand, within Dsui_1995 at 2103.091 kb on + strand at 2103.178 kb on - strand, within Dsui_1995 at 2103.180 kb on + strand at 2103.257 kb on - strand, within Dsui_1995 at 2103.313 kb on - strand, within Dsui_1995 at 2103.345 kb on + strand, within Dsui_1995 at 2103.468 kb on - strand, within Dsui_1995 at 2103.502 kb on - strand at 2103.506 kb on + strand at 2103.638 kb on + strand at 2103.645 kb on + strand at 2103.696 kb on - strand at 2103.753 kb on - strand at 2103.776 kb on - strand at 2103.788 kb on - strand at 2103.788 kb on - strand at 2103.788 kb on - strand at 2103.805 kb on - strand at 2103.921 kb on + strand, within Dsui_1996 at 2103.998 kb on - strand, within Dsui_1996 at 2104.145 kb on - strand, within Dsui_1996 at 2104.155 kb on - strand, within Dsui_1996 at 2104.224 kb on - strand, within Dsui_1996 at 2104.226 kb on + strand, within Dsui_1996 at 2104.236 kb on + strand, within Dsui_1996 at 2104.341 kb on + strand, within Dsui_1996 at 2104.349 kb on - strand, within Dsui_1996 at 2104.395 kb on + strand, within Dsui_1996 at 2104.407 kb on - strand, within Dsui_1996 at 2104.446 kb on + strand at 2104.514 kb on - strand, within Dsui_1996 at 2104.516 kb on - strand, within Dsui_1996 at 2104.562 kb on + strand, within Dsui_1996 at 2104.562 kb on + strand at 2104.562 kb on + strand at 2104.562 kb on + strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.628 kb on - strand, within Dsui_1996 at 2104.636 kb on - strand, within Dsui_1996 at 2104.727 kb on - strand, within Dsui_1996 at 2104.742 kb on - strand, within Dsui_1996 at 2104.742 kb on - strand, within Dsui_1996 at 2104.751 kb on + strand, within Dsui_1996 at 2104.751 kb on + strand, within Dsui_1996 at 2104.759 kb on - strand, within Dsui_1996 at 2104.759 kb on - strand, within Dsui_1996 at 2104.872 kb on - strand, within Dsui_1996 at 2104.875 kb on + strand at 2104.881 kb on + strand, within Dsui_1996 at 2104.881 kb on + strand, within Dsui_1996 at 2104.881 kb on + strand, within Dsui_1996 at 2104.889 kb on - strand, within Dsui_1996 at 2104.894 kb on - strand, within Dsui_1996 at 2104.956 kb on - strand, within Dsui_1996 at 2105.010 kb on - strand at 2105.090 kb on - strand at 2105.144 kb on - strand at 2105.144 kb on - strand at 2105.144 kb on - strand at 2105.248 kb on + strand at 2105.253 kb on + strand at 2105.253 kb on + strand at 2105.255 kb on + strand at 2105.261 kb on - strand, within Dsui_1997 at 2105.261 kb on - strand, within Dsui_1997 at 2105.314 kb on - strand, within Dsui_1997 at 2105.396 kb on - strand at 2105.541 kb on - strand, within Dsui_1997 at 2105.611 kb on + strand at 2105.661 kb on + strand at 2105.661 kb on + strand at 2105.687 kb on + strand at 2105.687 kb on + strand at 2105.687 kb on + strand at 2105.695 kb on - strand at 2105.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,102,923 + +1.4 2,102,935 - Dsui_1995 0.45 +1.2 2,102,942 - Dsui_1995 0.45 +0.3 2,102,945 + Dsui_1995 0.45 +0.7 2,102,965 + Dsui_1995 0.47 +1.1 2,103,091 + +0.7 2,103,178 - Dsui_1995 0.65 +1.0 2,103,180 + +1.1 2,103,257 - Dsui_1995 0.71 +0.3 2,103,313 - Dsui_1995 0.76 +0.3 2,103,345 + Dsui_1995 0.78 +0.2 2,103,468 - Dsui_1995 0.89 -0.5 2,103,502 - -0.3 2,103,506 + +2.2 2,103,638 + +0.6 2,103,645 + +0.5 2,103,696 - -0.4 2,103,753 - +0.9 2,103,776 - +0.6 2,103,788 - +0.1 2,103,788 - +0.7 2,103,788 - -0.1 2,103,805 - +1.1 2,103,921 + Dsui_1996 0.17 -0.2 2,103,998 - Dsui_1996 0.23 +1.2 2,104,145 - Dsui_1996 0.33 +0.2 2,104,155 - Dsui_1996 0.33 +0.6 2,104,224 - Dsui_1996 0.38 +0.3 2,104,226 + Dsui_1996 0.38 +0.8 2,104,236 + Dsui_1996 0.39 +0.7 2,104,341 + Dsui_1996 0.46 -0.3 2,104,349 - Dsui_1996 0.47 +0.9 2,104,395 + Dsui_1996 0.50 -0.1 2,104,407 - Dsui_1996 0.51 +0.7 2,104,446 + +0.1 2,104,514 - Dsui_1996 0.58 +0.3 2,104,516 - Dsui_1996 0.58 +0.5 2,104,562 + Dsui_1996 0.62 +0.5 2,104,562 + +0.7 2,104,562 + +1.2 2,104,562 + Dsui_1996 0.62 -0.3 2,104,570 - Dsui_1996 0.62 +1.1 2,104,570 - Dsui_1996 0.62 +0.8 2,104,570 - Dsui_1996 0.62 +0.7 2,104,628 - Dsui_1996 0.66 +0.4 2,104,636 - Dsui_1996 0.67 +1.2 2,104,727 - Dsui_1996 0.73 +1.0 2,104,742 - Dsui_1996 0.74 +1.2 2,104,742 - Dsui_1996 0.74 +0.3 2,104,751 + Dsui_1996 0.75 +0.0 2,104,751 + Dsui_1996 0.75 +1.1 2,104,759 - Dsui_1996 0.75 +0.6 2,104,759 - Dsui_1996 0.75 -1.4 2,104,872 - Dsui_1996 0.83 +0.6 2,104,875 + -0.1 2,104,881 + Dsui_1996 0.84 +0.9 2,104,881 + Dsui_1996 0.84 +0.7 2,104,881 + Dsui_1996 0.84 -0.2 2,104,889 - Dsui_1996 0.84 +0.7 2,104,894 - Dsui_1996 0.85 +0.2 2,104,956 - Dsui_1996 0.89 +0.0 2,105,010 - +0.2 2,105,090 - +0.8 2,105,144 - +0.5 2,105,144 - +0.5 2,105,144 - +0.5 2,105,248 + +1.2 2,105,253 + +0.1 2,105,253 + +1.7 2,105,255 + +1.1 2,105,261 - Dsui_1997 0.26 +0.1 2,105,261 - Dsui_1997 0.26 +0.1 2,105,314 - Dsui_1997 0.37 +1.3 2,105,396 - -0.3 2,105,541 - Dsui_1997 0.85 -0.0 2,105,611 + +1.7 2,105,661 + +0.7 2,105,661 + +0.1 2,105,687 + +1.7 2,105,687 + +0.1 2,105,687 + +0.9 2,105,695 - +0.7 2,105,706 - -1.7
Or see this region's nucleotide sequence