Strain Fitness in Dechlorosoma suillum PS around Dsui_1970

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1968 and Dsui_1969 overlap by 1 nucleotidesDsui_1969 and Dsui_1970 overlap by 4 nucleotidesDsui_1970 and Dsui_1971 are separated by 10 nucleotides Dsui_1968: Dsui_1968 - 5''/3''-nucleotidase SurE, at 2,076,462 to 2,077,202 _1968 Dsui_1969: Dsui_1969 - protein-L-isoaspartate and D-aspartate O-methyltransferase, at 2,077,202 to 2,077,876 _1969 Dsui_1970: Dsui_1970 - metalloendopeptidase-like membrane protein, at 2,077,873 to 2,078,781 _1970 Dsui_1971: Dsui_1971 - RNA polymerase sigma factor RpoS, at 2,078,792 to 2,079,778 _1971 Position (kb) 2077 2078 2079Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2076.942 kb on - strand, within Dsui_1968at 2076.966 kb on - strand, within Dsui_1968at 2076.966 kb on - strand, within Dsui_1968at 2076.986 kb on - strand, within Dsui_1968at 2077.001 kb on + strand, within Dsui_1968at 2077.001 kb on + strand, within Dsui_1968at 2077.009 kb on - strand, within Dsui_1968at 2077.063 kb on + strand, within Dsui_1968at 2077.066 kb on - strand, within Dsui_1968at 2077.071 kb on - strand, within Dsui_1968at 2077.116 kb on + strand, within Dsui_1968at 2077.121 kb on + strand, within Dsui_1968at 2077.124 kb on - strand, within Dsui_1968at 2077.129 kb on - strandat 2077.129 kb on - strandat 2077.132 kb on + strandat 2077.174 kb on + strandat 2077.177 kb on - strandat 2077.265 kb on - strandat 2077.345 kb on + strand, within Dsui_1969at 2077.346 kb on + strand, within Dsui_1969at 2077.361 kb on + strand, within Dsui_1969at 2077.372 kb on - strand, within Dsui_1969at 2077.419 kb on - strand, within Dsui_1969at 2077.441 kb on + strand, within Dsui_1969at 2077.441 kb on + strand, within Dsui_1969at 2077.452 kb on + strand, within Dsui_1969at 2077.452 kb on + strand, within Dsui_1969at 2077.460 kb on - strand, within Dsui_1969at 2077.460 kb on - strand, within Dsui_1969at 2077.539 kb on - strand, within Dsui_1969at 2077.549 kb on + strand, within Dsui_1969at 2077.557 kb on - strand, within Dsui_1969at 2077.752 kb on + strand, within Dsui_1969at 2077.808 kb on + strand, within Dsui_1969at 2077.869 kb on - strandat 2077.907 kb on + strandat 2077.972 kb on + strand, within Dsui_1970at 2077.989 kb on + strand, within Dsui_1970at 2078.056 kb on + strand, within Dsui_1970at 2078.078 kb on + strand, within Dsui_1970at 2078.305 kb on - strand, within Dsui_1970at 2078.307 kb on + strand, within Dsui_1970at 2078.307 kb on + strand, within Dsui_1970at 2078.307 kb on + strand, within Dsui_1970at 2078.315 kb on - strand, within Dsui_1970at 2078.482 kb on + strand, within Dsui_1970at 2078.539 kb on + strand, within Dsui_1970at 2078.573 kb on - strandat 2078.585 kb on - strand, within Dsui_1970at 2078.645 kb on + strand, within Dsui_1970at 2078.663 kb on + strand, within Dsui_1970at 2078.775 kb on + strandat 2078.784 kb on + strandat 2078.784 kb on + strandat 2078.784 kb on + strandat 2078.784 kb on + strandat 2078.869 kb on - strandat 2078.869 kb on - strandat 2078.872 kb on + strandat 2079.030 kb on - strand, within Dsui_1971at 2079.035 kb on - strand, within Dsui_1971at 2079.069 kb on + strand, within Dsui_1971at 2079.077 kb on - strand, within Dsui_1971at 2079.085 kb on + strand, within Dsui_1971at 2079.097 kb on + strand, within Dsui_1971at 2079.147 kb on + strand, within Dsui_1971at 2079.148 kb on + strand, within Dsui_1971at 2079.155 kb on - strandat 2079.185 kb on + strand, within Dsui_1971at 2079.209 kb on - strand, within Dsui_1971at 2079.227 kb on + strand, within Dsui_1971at 2079.345 kb on + strand, within Dsui_1971at 2079.353 kb on - strand, within Dsui_1971at 2079.377 kb on + strand, within Dsui_1971at 2079.415 kb on - strand, within Dsui_1971at 2079.458 kb on - strand, within Dsui_1971at 2079.480 kb on + strand, within Dsui_1971at 2079.488 kb on + strand, within Dsui_1971at 2079.496 kb on - strand, within Dsui_1971at 2079.574 kb on - strand, within Dsui_1971at 2079.584 kb on - strand, within Dsui_1971at 2079.635 kb on - strand, within Dsui_1971at 2079.703 kb on + strandat 2079.709 kb on + strandat 2079.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,076,942 - Dsui_1968 0.65 -1.4
2,076,966 - Dsui_1968 0.68 -1.5
2,076,966 - Dsui_1968 0.68 -3.1
2,076,986 - Dsui_1968 0.71 -2.6
2,077,001 + Dsui_1968 0.73 -1.7
2,077,001 + Dsui_1968 0.73 +0.3
2,077,009 - Dsui_1968 0.74 -0.6
2,077,063 + Dsui_1968 0.81 -1.2
2,077,066 - Dsui_1968 0.82 -1.8
2,077,071 - Dsui_1968 0.82 -2.8
2,077,116 + Dsui_1968 0.88 -3.0
2,077,121 + Dsui_1968 0.89 -0.7
2,077,124 - Dsui_1968 0.89 -2.2
2,077,129 - -4.0
2,077,129 - -2.9
2,077,132 + -0.8
2,077,174 + -1.3
2,077,177 - -1.9
2,077,265 - -3.5
2,077,345 + Dsui_1969 0.21 -2.1
2,077,346 + Dsui_1969 0.21 -2.1
2,077,361 + Dsui_1969 0.24 -3.4
2,077,372 - Dsui_1969 0.25 -2.1
2,077,419 - Dsui_1969 0.32 -3.5
2,077,441 + Dsui_1969 0.35 -1.8
2,077,441 + Dsui_1969 0.35 -4.0
2,077,452 + Dsui_1969 0.37 -1.7
2,077,452 + Dsui_1969 0.37 -1.7
2,077,460 - Dsui_1969 0.38 -2.9
2,077,460 - Dsui_1969 0.38 -3.9
2,077,539 - Dsui_1969 0.50 -3.6
2,077,549 + Dsui_1969 0.51 -1.0
2,077,557 - Dsui_1969 0.53 -2.6
2,077,752 + Dsui_1969 0.81 -2.9
2,077,808 + Dsui_1969 0.90 -1.7
2,077,869 - -4.1
2,077,907 + -3.1
2,077,972 + Dsui_1970 0.11 -1.4
2,077,989 + Dsui_1970 0.13 -0.9
2,078,056 + Dsui_1970 0.20 -2.7
2,078,078 + Dsui_1970 0.23 -2.2
2,078,305 - Dsui_1970 0.48 -1.7
2,078,307 + Dsui_1970 0.48 -2.1
2,078,307 + Dsui_1970 0.48 -2.2
2,078,307 + Dsui_1970 0.48 -2.9
2,078,315 - Dsui_1970 0.49 -1.1
2,078,482 + Dsui_1970 0.67 -1.7
2,078,539 + Dsui_1970 0.73 -1.7
2,078,573 - -0.4
2,078,585 - Dsui_1970 0.78 -2.4
2,078,645 + Dsui_1970 0.85 -2.4
2,078,663 + Dsui_1970 0.87 -2.5
2,078,775 + +0.0
2,078,784 + +0.0
2,078,784 + -0.0
2,078,784 + +0.4
2,078,784 + +0.0
2,078,869 - +0.6
2,078,869 - +0.2
2,078,872 + +0.7
2,079,030 - Dsui_1971 0.24 -0.5
2,079,035 - Dsui_1971 0.25 -0.2
2,079,069 + Dsui_1971 0.28 -0.4
2,079,077 - Dsui_1971 0.29 -1.2
2,079,085 + Dsui_1971 0.30 +0.2
2,079,097 + Dsui_1971 0.31 +0.6
2,079,147 + Dsui_1971 0.36 -0.1
2,079,148 + Dsui_1971 0.36 +0.4
2,079,155 - +0.1
2,079,185 + Dsui_1971 0.40 -0.1
2,079,209 - Dsui_1971 0.42 +0.3
2,079,227 + Dsui_1971 0.44 +0.6
2,079,345 + Dsui_1971 0.56 +0.3
2,079,353 - Dsui_1971 0.57 +0.1
2,079,377 + Dsui_1971 0.59 -0.0
2,079,415 - Dsui_1971 0.63 -0.0
2,079,458 - Dsui_1971 0.67 -2.1
2,079,480 + Dsui_1971 0.70 +0.2
2,079,488 + Dsui_1971 0.71 +0.2
2,079,496 - Dsui_1971 0.71 +0.4
2,079,574 - Dsui_1971 0.79 +0.9
2,079,584 - Dsui_1971 0.80 +0.5
2,079,635 - Dsui_1971 0.85 +0.1
2,079,703 + -0.3
2,079,709 + -0.0
2,079,725 - -0.7

Or see this region's nucleotide sequence