Strain Fitness in Dechlorosoma suillum PS around Dsui_1760

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1758 and Dsui_1759 are separated by 53 nucleotidesDsui_1759 and Dsui_1760 are separated by 178 nucleotidesDsui_1760 and Dsui_1761 are separated by 53 nucleotides Dsui_1758: Dsui_1758 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,845,415 to 1,846,839 _1758 Dsui_1759: Dsui_1759 - flagellar hook-basal body complex protein FliE, at 1,846,893 to 1,847,216 _1759 Dsui_1760: Dsui_1760 - putative O-linked N-acetylglucosamine transferase, SPINDLY family, at 1,847,395 to 1,849,272 _1760 Dsui_1761: Dsui_1761 - methylase involved in ubiquinone/menaquinone biosynthesis, at 1,849,326 to 1,850,357 _1761 Position (kb) 1847 1848 1849 1850Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1846.464 kb on + strand, within Dsui_1758at 1846.472 kb on - strand, within Dsui_1758at 1846.491 kb on - strand, within Dsui_1758at 1846.504 kb on + strand, within Dsui_1758at 1846.627 kb on + strand, within Dsui_1758at 1846.632 kb on + strand, within Dsui_1758at 1846.648 kb on - strand, within Dsui_1758at 1846.650 kb on + strand, within Dsui_1758at 1846.650 kb on + strand, within Dsui_1758at 1846.658 kb on - strand, within Dsui_1758at 1846.658 kb on - strand, within Dsui_1758at 1846.660 kb on + strand, within Dsui_1758at 1846.688 kb on + strand, within Dsui_1758at 1846.688 kb on + strand, within Dsui_1758at 1846.696 kb on - strand, within Dsui_1758at 1846.700 kb on + strandat 1846.728 kb on + strandat 1846.730 kb on + strandat 1846.733 kb on + strandat 1846.800 kb on + strandat 1846.800 kb on + strandat 1846.800 kb on + strandat 1846.807 kb on - strandat 1846.807 kb on - strandat 1846.808 kb on - strandat 1846.812 kb on + strandat 1846.839 kb on + strandat 1846.839 kb on + strandat 1846.839 kb on + strandat 1846.847 kb on - strandat 1846.847 kb on - strandat 1846.847 kb on - strandat 1846.847 kb on - strandat 1846.898 kb on + strandat 1846.898 kb on + strandat 1846.900 kb on - strandat 1846.929 kb on + strand, within Dsui_1759at 1847.033 kb on + strand, within Dsui_1759at 1847.033 kb on + strand, within Dsui_1759at 1847.055 kb on + strand, within Dsui_1759at 1847.072 kb on + strand, within Dsui_1759at 1847.126 kb on + strand, within Dsui_1759at 1847.177 kb on + strand, within Dsui_1759at 1847.203 kb on + strandat 1847.210 kb on + strandat 1847.211 kb on - strandat 1847.215 kb on + strandat 1847.228 kb on - strandat 1847.228 kb on - strandat 1847.262 kb on + strandat 1847.262 kb on + strandat 1847.321 kb on - strandat 1847.322 kb on + strandat 1847.358 kb on + strandat 1847.358 kb on + strandat 1847.358 kb on + strandat 1847.364 kb on + strandat 1847.366 kb on - strandat 1847.372 kb on - strandat 1847.402 kb on + strandat 1847.411 kb on - strandat 1847.412 kb on - strandat 1847.418 kb on + strandat 1847.426 kb on - strandat 1847.446 kb on + strandat 1847.461 kb on + strandat 1847.461 kb on + strandat 1847.461 kb on + strandat 1847.462 kb on - strandat 1847.464 kb on - strandat 1847.469 kb on - strandat 1847.525 kb on - strandat 1847.546 kb on - strandat 1847.547 kb on + strandat 1847.547 kb on + strandat 1847.547 kb on + strandat 1847.547 kb on - strandat 1847.555 kb on - strandat 1847.555 kb on - strandat 1847.555 kb on - strandat 1847.555 kb on - strandat 1847.555 kb on - strandat 1847.557 kb on + strandat 1847.619 kb on - strand, within Dsui_1760at 1847.619 kb on - strand, within Dsui_1760at 1847.644 kb on + strand, within Dsui_1760at 1847.693 kb on - strand, within Dsui_1760at 1847.695 kb on - strand, within Dsui_1760at 1847.724 kb on + strand, within Dsui_1760at 1847.760 kb on + strand, within Dsui_1760at 1847.861 kb on + strand, within Dsui_1760at 1847.861 kb on + strand, within Dsui_1760at 1847.869 kb on - strandat 1847.921 kb on + strand, within Dsui_1760at 1847.931 kb on + strand, within Dsui_1760at 1847.939 kb on - strand, within Dsui_1760at 1848.102 kb on + strand, within Dsui_1760at 1848.122 kb on - strandat 1848.184 kb on - strand, within Dsui_1760at 1848.195 kb on + strand, within Dsui_1760at 1848.203 kb on - strand, within Dsui_1760at 1848.240 kb on + strand, within Dsui_1760at 1848.488 kb on + strand, within Dsui_1760at 1848.491 kb on - strand, within Dsui_1760at 1848.516 kb on + strand, within Dsui_1760at 1848.519 kb on - strand, within Dsui_1760at 1848.706 kb on - strand, within Dsui_1760at 1848.706 kb on - strand, within Dsui_1760at 1848.766 kb on - strand, within Dsui_1760at 1848.839 kb on + strand, within Dsui_1760at 1848.875 kb on - strand, within Dsui_1760at 1849.092 kb on - strandat 1849.092 kb on - strandat 1849.219 kb on - strandat 1849.252 kb on - strandat 1849.258 kb on - strandat 1849.268 kb on + strandat 1849.268 kb on - strandat 1849.268 kb on - strandat 1849.316 kb on + strandat 1849.316 kb on + strandat 1849.319 kb on - strandat 1849.324 kb on - strandat 1849.324 kb on - strandat 1849.326 kb on + strandat 1849.366 kb on - strandat 1849.370 kb on + strandat 1849.378 kb on + strandat 1849.378 kb on - strandat 1849.540 kb on - strand, within Dsui_1761at 1849.563 kb on + strand, within Dsui_1761at 1849.570 kb on - strand, within Dsui_1761at 1849.650 kb on + strand, within Dsui_1761at 1849.664 kb on + strand, within Dsui_1761at 1849.672 kb on - strand, within Dsui_1761at 1849.765 kb on + strand, within Dsui_1761at 1849.789 kb on + strand, within Dsui_1761at 1849.789 kb on + strand, within Dsui_1761at 1849.873 kb on - strand, within Dsui_1761at 1849.877 kb on + strand, within Dsui_1761at 1850.052 kb on - strand, within Dsui_1761at 1850.052 kb on - strand, within Dsui_1761at 1850.052 kb on - strand, within Dsui_1761at 1850.082 kb on - strand, within Dsui_1761at 1850.090 kb on + strand, within Dsui_1761at 1850.094 kb on - strand, within Dsui_1761at 1850.118 kb on - strand, within Dsui_1761at 1850.216 kb on - strand, within Dsui_1761

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,846,464 + Dsui_1758 0.74 -0.4
1,846,472 - Dsui_1758 0.74 -0.6
1,846,491 - Dsui_1758 0.76 -0.6
1,846,504 + Dsui_1758 0.76 +1.1
1,846,627 + Dsui_1758 0.85 -0.1
1,846,632 + Dsui_1758 0.85 +0.4
1,846,648 - Dsui_1758 0.87 -1.4
1,846,650 + Dsui_1758 0.87 -1.0
1,846,650 + Dsui_1758 0.87 -0.6
1,846,658 - Dsui_1758 0.87 -1.2
1,846,658 - Dsui_1758 0.87 -0.4
1,846,660 + Dsui_1758 0.87 -0.5
1,846,688 + Dsui_1758 0.89 -0.4
1,846,688 + Dsui_1758 0.89 -0.6
1,846,696 - Dsui_1758 0.90 -0.4
1,846,700 + -0.2
1,846,728 + -0.6
1,846,730 + -0.6
1,846,733 + -0.7
1,846,800 + -0.2
1,846,800 + -0.3
1,846,800 + -0.7
1,846,807 - +0.1
1,846,807 - -1.6
1,846,808 - +0.2
1,846,812 + -0.0
1,846,839 + +0.0
1,846,839 + +0.3
1,846,839 + -0.4
1,846,847 - +0.1
1,846,847 - +0.0
1,846,847 - +0.5
1,846,847 - +0.6
1,846,898 + -0.3
1,846,898 + -0.1
1,846,900 - +0.4
1,846,929 + Dsui_1759 0.11 -5.2
1,847,033 + Dsui_1759 0.43 -2.3
1,847,033 + Dsui_1759 0.43 -2.8
1,847,055 + Dsui_1759 0.50 -0.0
1,847,072 + Dsui_1759 0.55 -3.6
1,847,126 + Dsui_1759 0.72 -2.5
1,847,177 + Dsui_1759 0.88 -0.3
1,847,203 + -0.9
1,847,210 + +0.4
1,847,211 - -0.9
1,847,215 + +0.3
1,847,228 - -0.2
1,847,228 - +0.6
1,847,262 + +0.5
1,847,262 + +0.1
1,847,321 - +0.2
1,847,322 + -0.9
1,847,358 + -0.5
1,847,358 + -0.7
1,847,358 + +0.4
1,847,364 + +0.1
1,847,366 - -0.3
1,847,372 - -0.0
1,847,402 + -1.3
1,847,411 - +0.2
1,847,412 - +0.2
1,847,418 + -0.0
1,847,426 - -0.4
1,847,446 + -2.2
1,847,461 + -0.6
1,847,461 + -0.7
1,847,461 + -0.7
1,847,462 - -0.6
1,847,464 - -0.8
1,847,469 - -1.2
1,847,525 - +1.6
1,847,546 - -1.0
1,847,547 + -0.8
1,847,547 + -0.3
1,847,547 + -1.0
1,847,547 - -2.0
1,847,555 - -1.4
1,847,555 - -2.8
1,847,555 - -1.1
1,847,555 - -1.8
1,847,555 - -1.6
1,847,557 + -1.8
1,847,619 - Dsui_1760 0.12 -1.2
1,847,619 - Dsui_1760 0.12 -0.3
1,847,644 + Dsui_1760 0.13 -1.9
1,847,693 - Dsui_1760 0.16 -0.9
1,847,695 - Dsui_1760 0.16 -3.0
1,847,724 + Dsui_1760 0.18 -1.2
1,847,760 + Dsui_1760 0.19 -0.9
1,847,861 + Dsui_1760 0.25 -0.9
1,847,861 + Dsui_1760 0.25 -1.3
1,847,869 - +2.2
1,847,921 + Dsui_1760 0.28 -1.4
1,847,931 + Dsui_1760 0.29 -1.0
1,847,939 - Dsui_1760 0.29 -1.1
1,848,102 + Dsui_1760 0.38 -1.1
1,848,122 - +0.6
1,848,184 - Dsui_1760 0.42 -1.1
1,848,195 + Dsui_1760 0.43 -0.9
1,848,203 - Dsui_1760 0.43 +0.2
1,848,240 + Dsui_1760 0.45 -1.4
1,848,488 + Dsui_1760 0.58 -0.9
1,848,491 - Dsui_1760 0.58 -1.0
1,848,516 + Dsui_1760 0.60 -1.4
1,848,519 - Dsui_1760 0.60 +0.1
1,848,706 - Dsui_1760 0.70 -0.0
1,848,706 - Dsui_1760 0.70 -1.0
1,848,766 - Dsui_1760 0.73 -2.6
1,848,839 + Dsui_1760 0.77 -1.1
1,848,875 - Dsui_1760 0.79 +0.4
1,849,092 - -0.6
1,849,092 - -0.4
1,849,219 - -0.6
1,849,252 - -0.4
1,849,258 - -0.2
1,849,268 + -0.1
1,849,268 - -1.0
1,849,268 - +0.2
1,849,316 + -0.7
1,849,316 + +0.2
1,849,319 - -1.0
1,849,324 - +0.5
1,849,324 - -1.9
1,849,326 + +0.5
1,849,366 - +1.2
1,849,370 + +0.0
1,849,378 + -0.3
1,849,378 - -1.2
1,849,540 - Dsui_1761 0.21 +0.2
1,849,563 + Dsui_1761 0.23 +0.4
1,849,570 - Dsui_1761 0.24 -0.2
1,849,650 + Dsui_1761 0.31 +0.1
1,849,664 + Dsui_1761 0.33 -0.3
1,849,672 - Dsui_1761 0.34 -0.4
1,849,765 + Dsui_1761 0.43 -0.2
1,849,789 + Dsui_1761 0.45 +0.4
1,849,789 + Dsui_1761 0.45 +0.1
1,849,873 - Dsui_1761 0.53 -1.0
1,849,877 + Dsui_1761 0.53 -0.1
1,850,052 - Dsui_1761 0.70 +0.4
1,850,052 - Dsui_1761 0.70 +0.3
1,850,052 - Dsui_1761 0.70 +0.4
1,850,082 - Dsui_1761 0.73 +0.0
1,850,090 + Dsui_1761 0.74 -0.2
1,850,094 - Dsui_1761 0.74 -0.3
1,850,118 - Dsui_1761 0.77 +0.2
1,850,216 - Dsui_1761 0.86 +0.1

Or see this region's nucleotide sequence