Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1758 and Dsui_1759 are separated by 53 nucleotides Dsui_1759 and Dsui_1760 are separated by 178 nucleotides Dsui_1760 and Dsui_1761 are separated by 53 nucleotides
Dsui_1758: Dsui_1758 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,845,415 to 1,846,839
_1758
Dsui_1759: Dsui_1759 - flagellar hook-basal body complex protein FliE, at 1,846,893 to 1,847,216
_1759
Dsui_1760: Dsui_1760 - putative O-linked N-acetylglucosamine transferase, SPINDLY family, at 1,847,395 to 1,849,272
_1760
Dsui_1761: Dsui_1761 - methylase involved in ubiquinone/menaquinone biosynthesis, at 1,849,326 to 1,850,357
_1761
Position (kb)
1847
1848
1849
1850 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1846.464 kb on + strand, within Dsui_1758 at 1846.472 kb on - strand, within Dsui_1758 at 1846.491 kb on - strand, within Dsui_1758 at 1846.504 kb on + strand, within Dsui_1758 at 1846.627 kb on + strand, within Dsui_1758 at 1846.632 kb on + strand, within Dsui_1758 at 1846.648 kb on - strand, within Dsui_1758 at 1846.650 kb on + strand, within Dsui_1758 at 1846.650 kb on + strand, within Dsui_1758 at 1846.658 kb on - strand, within Dsui_1758 at 1846.658 kb on - strand, within Dsui_1758 at 1846.660 kb on + strand, within Dsui_1758 at 1846.688 kb on + strand, within Dsui_1758 at 1846.688 kb on + strand, within Dsui_1758 at 1846.696 kb on - strand, within Dsui_1758 at 1846.700 kb on + strand at 1846.728 kb on + strand at 1846.730 kb on + strand at 1846.733 kb on + strand at 1846.800 kb on + strand at 1846.800 kb on + strand at 1846.800 kb on + strand at 1846.807 kb on - strand at 1846.807 kb on - strand at 1846.808 kb on - strand at 1846.812 kb on + strand at 1846.839 kb on + strand at 1846.839 kb on + strand at 1846.839 kb on + strand at 1846.847 kb on - strand at 1846.847 kb on - strand at 1846.847 kb on - strand at 1846.847 kb on - strand at 1846.898 kb on + strand at 1846.898 kb on + strand at 1846.900 kb on - strand at 1846.929 kb on + strand, within Dsui_1759 at 1847.033 kb on + strand, within Dsui_1759 at 1847.033 kb on + strand, within Dsui_1759 at 1847.055 kb on + strand, within Dsui_1759 at 1847.072 kb on + strand, within Dsui_1759 at 1847.126 kb on + strand, within Dsui_1759 at 1847.177 kb on + strand, within Dsui_1759 at 1847.203 kb on + strand at 1847.210 kb on + strand at 1847.211 kb on - strand at 1847.215 kb on + strand at 1847.228 kb on - strand at 1847.228 kb on - strand at 1847.262 kb on + strand at 1847.262 kb on + strand at 1847.321 kb on - strand at 1847.322 kb on + strand at 1847.358 kb on + strand at 1847.358 kb on + strand at 1847.358 kb on + strand at 1847.364 kb on + strand at 1847.366 kb on - strand at 1847.372 kb on - strand at 1847.402 kb on + strand at 1847.411 kb on - strand at 1847.412 kb on - strand at 1847.418 kb on + strand at 1847.426 kb on - strand at 1847.446 kb on + strand at 1847.461 kb on + strand at 1847.461 kb on + strand at 1847.461 kb on + strand at 1847.462 kb on - strand at 1847.464 kb on - strand at 1847.469 kb on - strand at 1847.525 kb on - strand at 1847.546 kb on - strand at 1847.547 kb on + strand at 1847.547 kb on + strand at 1847.547 kb on + strand at 1847.547 kb on - strand at 1847.555 kb on - strand at 1847.555 kb on - strand at 1847.555 kb on - strand at 1847.555 kb on - strand at 1847.555 kb on - strand at 1847.557 kb on + strand at 1847.619 kb on - strand, within Dsui_1760 at 1847.619 kb on - strand, within Dsui_1760 at 1847.644 kb on + strand, within Dsui_1760 at 1847.693 kb on - strand, within Dsui_1760 at 1847.695 kb on - strand, within Dsui_1760 at 1847.724 kb on + strand, within Dsui_1760 at 1847.760 kb on + strand, within Dsui_1760 at 1847.861 kb on + strand, within Dsui_1760 at 1847.861 kb on + strand, within Dsui_1760 at 1847.869 kb on - strand at 1847.921 kb on + strand, within Dsui_1760 at 1847.931 kb on + strand, within Dsui_1760 at 1847.939 kb on - strand, within Dsui_1760 at 1848.102 kb on + strand, within Dsui_1760 at 1848.122 kb on - strand at 1848.184 kb on - strand, within Dsui_1760 at 1848.195 kb on + strand, within Dsui_1760 at 1848.203 kb on - strand, within Dsui_1760 at 1848.240 kb on + strand, within Dsui_1760 at 1848.488 kb on + strand, within Dsui_1760 at 1848.491 kb on - strand, within Dsui_1760 at 1848.516 kb on + strand, within Dsui_1760 at 1848.519 kb on - strand, within Dsui_1760 at 1848.706 kb on - strand, within Dsui_1760 at 1848.706 kb on - strand, within Dsui_1760 at 1848.766 kb on - strand, within Dsui_1760 at 1848.839 kb on + strand, within Dsui_1760 at 1848.875 kb on - strand, within Dsui_1760 at 1849.092 kb on - strand at 1849.092 kb on - strand at 1849.219 kb on - strand at 1849.252 kb on - strand at 1849.258 kb on - strand at 1849.268 kb on + strand at 1849.268 kb on - strand at 1849.268 kb on - strand at 1849.316 kb on + strand at 1849.316 kb on + strand at 1849.319 kb on - strand at 1849.324 kb on - strand at 1849.324 kb on - strand at 1849.326 kb on + strand at 1849.366 kb on - strand at 1849.370 kb on + strand at 1849.378 kb on + strand at 1849.378 kb on - strand at 1849.540 kb on - strand, within Dsui_1761 at 1849.563 kb on + strand, within Dsui_1761 at 1849.570 kb on - strand, within Dsui_1761 at 1849.650 kb on + strand, within Dsui_1761 at 1849.664 kb on + strand, within Dsui_1761 at 1849.672 kb on - strand, within Dsui_1761 at 1849.765 kb on + strand, within Dsui_1761 at 1849.789 kb on + strand, within Dsui_1761 at 1849.789 kb on + strand, within Dsui_1761 at 1849.873 kb on - strand, within Dsui_1761 at 1849.877 kb on + strand, within Dsui_1761 at 1850.052 kb on - strand, within Dsui_1761 at 1850.052 kb on - strand, within Dsui_1761 at 1850.052 kb on - strand, within Dsui_1761 at 1850.082 kb on - strand, within Dsui_1761 at 1850.090 kb on + strand, within Dsui_1761 at 1850.094 kb on - strand, within Dsui_1761 at 1850.118 kb on - strand, within Dsui_1761 at 1850.216 kb on - strand, within Dsui_1761
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 1,846,464 + Dsui_1758 0.74 -0.4 1,846,472 - Dsui_1758 0.74 -0.6 1,846,491 - Dsui_1758 0.76 -0.6 1,846,504 + Dsui_1758 0.76 +1.1 1,846,627 + Dsui_1758 0.85 -0.1 1,846,632 + Dsui_1758 0.85 +0.4 1,846,648 - Dsui_1758 0.87 -1.4 1,846,650 + Dsui_1758 0.87 -1.0 1,846,650 + Dsui_1758 0.87 -0.6 1,846,658 - Dsui_1758 0.87 -1.2 1,846,658 - Dsui_1758 0.87 -0.4 1,846,660 + Dsui_1758 0.87 -0.5 1,846,688 + Dsui_1758 0.89 -0.4 1,846,688 + Dsui_1758 0.89 -0.6 1,846,696 - Dsui_1758 0.90 -0.4 1,846,700 + -0.2 1,846,728 + -0.6 1,846,730 + -0.6 1,846,733 + -0.7 1,846,800 + -0.2 1,846,800 + -0.3 1,846,800 + -0.7 1,846,807 - +0.1 1,846,807 - -1.6 1,846,808 - +0.2 1,846,812 + -0.0 1,846,839 + +0.0 1,846,839 + +0.3 1,846,839 + -0.4 1,846,847 - +0.1 1,846,847 - +0.0 1,846,847 - +0.5 1,846,847 - +0.6 1,846,898 + -0.3 1,846,898 + -0.1 1,846,900 - +0.4 1,846,929 + Dsui_1759 0.11 -5.2 1,847,033 + Dsui_1759 0.43 -2.3 1,847,033 + Dsui_1759 0.43 -2.8 1,847,055 + Dsui_1759 0.50 -0.0 1,847,072 + Dsui_1759 0.55 -3.6 1,847,126 + Dsui_1759 0.72 -2.5 1,847,177 + Dsui_1759 0.88 -0.3 1,847,203 + -0.9 1,847,210 + +0.4 1,847,211 - -0.9 1,847,215 + +0.3 1,847,228 - -0.2 1,847,228 - +0.6 1,847,262 + +0.5 1,847,262 + +0.1 1,847,321 - +0.2 1,847,322 + -0.9 1,847,358 + -0.5 1,847,358 + -0.7 1,847,358 + +0.4 1,847,364 + +0.1 1,847,366 - -0.3 1,847,372 - -0.0 1,847,402 + -1.3 1,847,411 - +0.2 1,847,412 - +0.2 1,847,418 + -0.0 1,847,426 - -0.4 1,847,446 + -2.2 1,847,461 + -0.6 1,847,461 + -0.7 1,847,461 + -0.7 1,847,462 - -0.6 1,847,464 - -0.8 1,847,469 - -1.2 1,847,525 - +1.6 1,847,546 - -1.0 1,847,547 + -0.8 1,847,547 + -0.3 1,847,547 + -1.0 1,847,547 - -2.0 1,847,555 - -1.4 1,847,555 - -2.8 1,847,555 - -1.1 1,847,555 - -1.8 1,847,555 - -1.6 1,847,557 + -1.8 1,847,619 - Dsui_1760 0.12 -1.2 1,847,619 - Dsui_1760 0.12 -0.3 1,847,644 + Dsui_1760 0.13 -1.9 1,847,693 - Dsui_1760 0.16 -0.9 1,847,695 - Dsui_1760 0.16 -3.0 1,847,724 + Dsui_1760 0.18 -1.2 1,847,760 + Dsui_1760 0.19 -0.9 1,847,861 + Dsui_1760 0.25 -0.9 1,847,861 + Dsui_1760 0.25 -1.3 1,847,869 - +2.2 1,847,921 + Dsui_1760 0.28 -1.4 1,847,931 + Dsui_1760 0.29 -1.0 1,847,939 - Dsui_1760 0.29 -1.1 1,848,102 + Dsui_1760 0.38 -1.1 1,848,122 - +0.6 1,848,184 - Dsui_1760 0.42 -1.1 1,848,195 + Dsui_1760 0.43 -0.9 1,848,203 - Dsui_1760 0.43 +0.2 1,848,240 + Dsui_1760 0.45 -1.4 1,848,488 + Dsui_1760 0.58 -0.9 1,848,491 - Dsui_1760 0.58 -1.0 1,848,516 + Dsui_1760 0.60 -1.4 1,848,519 - Dsui_1760 0.60 +0.1 1,848,706 - Dsui_1760 0.70 -0.0 1,848,706 - Dsui_1760 0.70 -1.0 1,848,766 - Dsui_1760 0.73 -2.6 1,848,839 + Dsui_1760 0.77 -1.1 1,848,875 - Dsui_1760 0.79 +0.4 1,849,092 - -0.6 1,849,092 - -0.4 1,849,219 - -0.6 1,849,252 - -0.4 1,849,258 - -0.2 1,849,268 + -0.1 1,849,268 - -1.0 1,849,268 - +0.2 1,849,316 + -0.7 1,849,316 + +0.2 1,849,319 - -1.0 1,849,324 - +0.5 1,849,324 - -1.9 1,849,326 + +0.5 1,849,366 - +1.2 1,849,370 + +0.0 1,849,378 + -0.3 1,849,378 - -1.2 1,849,540 - Dsui_1761 0.21 +0.2 1,849,563 + Dsui_1761 0.23 +0.4 1,849,570 - Dsui_1761 0.24 -0.2 1,849,650 + Dsui_1761 0.31 +0.1 1,849,664 + Dsui_1761 0.33 -0.3 1,849,672 - Dsui_1761 0.34 -0.4 1,849,765 + Dsui_1761 0.43 -0.2 1,849,789 + Dsui_1761 0.45 +0.4 1,849,789 + Dsui_1761 0.45 +0.1 1,849,873 - Dsui_1761 0.53 -1.0 1,849,877 + Dsui_1761 0.53 -0.1 1,850,052 - Dsui_1761 0.70 +0.4 1,850,052 - Dsui_1761 0.70 +0.3 1,850,052 - Dsui_1761 0.70 +0.4 1,850,082 - Dsui_1761 0.73 +0.0 1,850,090 + Dsui_1761 0.74 -0.2 1,850,094 - Dsui_1761 0.74 -0.3 1,850,118 - Dsui_1761 0.77 +0.2 1,850,216 - Dsui_1761 0.86 +0.1
Or see this region's nucleotide sequence