Strain Fitness in Dechlorosoma suillum PS around Dsui_1722

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1721 and Dsui_1722 are separated by 178 nucleotidesDsui_1722 and Dsui_1723 overlap by 8 nucleotides Dsui_1721: Dsui_1721 - chemotaxis protein histidine kinase-like protein, at 1,810,227 to 1,812,116 _1721 Dsui_1722: Dsui_1722 - flagellar biosynthetic protein FlhB, at 1,812,295 to 1,813,434 _1722 Dsui_1723: Dsui_1723 - flagellar biosynthesis protein FlhA, at 1,813,427 to 1,815,508 _1723 Position (kb) 1812 1813 1814Strain fitness (log2 ratio) -2 -1 0 1 2at 1811.298 kb on - strandat 1811.429 kb on + strand, within Dsui_1721at 1811.437 kb on - strand, within Dsui_1721at 1811.494 kb on + strand, within Dsui_1721at 1811.554 kb on + strand, within Dsui_1721at 1811.568 kb on - strand, within Dsui_1721at 1811.574 kb on - strand, within Dsui_1721at 1811.662 kb on + strand, within Dsui_1721at 1811.721 kb on - strand, within Dsui_1721at 1811.834 kb on + strand, within Dsui_1721at 1811.849 kb on - strand, within Dsui_1721at 1811.905 kb on + strand, within Dsui_1721at 1811.913 kb on - strand, within Dsui_1721at 1811.913 kb on - strand, within Dsui_1721at 1812.020 kb on - strandat 1812.055 kb on - strandat 1812.129 kb on + strandat 1812.291 kb on + strandat 1812.349 kb on + strandat 1812.438 kb on - strand, within Dsui_1722at 1812.461 kb on + strand, within Dsui_1722at 1812.500 kb on + strand, within Dsui_1722at 1812.596 kb on + strand, within Dsui_1722at 1812.625 kb on - strand, within Dsui_1722at 1812.664 kb on + strand, within Dsui_1722at 1812.664 kb on + strand, within Dsui_1722at 1812.674 kb on + strand, within Dsui_1722at 1812.723 kb on + strand, within Dsui_1722at 1812.732 kb on + strand, within Dsui_1722at 1812.740 kb on - strand, within Dsui_1722at 1812.767 kb on - strand, within Dsui_1722at 1812.779 kb on + strand, within Dsui_1722at 1812.796 kb on - strand, within Dsui_1722at 1812.843 kb on + strand, within Dsui_1722at 1812.851 kb on - strand, within Dsui_1722at 1812.950 kb on + strand, within Dsui_1722at 1813.019 kb on - strand, within Dsui_1722at 1813.082 kb on - strand, within Dsui_1722at 1813.128 kb on - strand, within Dsui_1722at 1813.240 kb on + strand, within Dsui_1722at 1813.263 kb on - strand, within Dsui_1722at 1813.265 kb on + strand, within Dsui_1722at 1813.294 kb on + strand, within Dsui_1722at 1813.297 kb on - strand, within Dsui_1722at 1813.302 kb on - strand, within Dsui_1722at 1813.307 kb on - strand, within Dsui_1722at 1813.326 kb on - strandat 1813.326 kb on - strandat 1813.380 kb on + strandat 1813.404 kb on + strandat 1813.412 kb on - strandat 1813.496 kb on + strandat 1813.630 kb on - strandat 1813.670 kb on - strand, within Dsui_1723at 1813.757 kb on + strand, within Dsui_1723at 1813.795 kb on + strand, within Dsui_1723at 1813.930 kb on + strand, within Dsui_1723at 1813.930 kb on + strand, within Dsui_1723at 1813.930 kb on + strand, within Dsui_1723at 1814.053 kb on - strand, within Dsui_1723at 1814.074 kb on - strand, within Dsui_1723at 1814.115 kb on + strand, within Dsui_1723at 1814.216 kb on + strand, within Dsui_1723at 1814.306 kb on - strandat 1814.344 kb on + strand, within Dsui_1723at 1814.349 kb on + strand, within Dsui_1723at 1814.418 kb on - strand, within Dsui_1723at 1814.419 kb on + strand, within Dsui_1723at 1814.419 kb on + strand, within Dsui_1723at 1814.419 kb on + strand, within Dsui_1723at 1814.419 kb on + strand, within Dsui_1723at 1814.419 kb on + strand, within Dsui_1723at 1814.427 kb on - strand, within Dsui_1723

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,811,298 - -0.5
1,811,429 + Dsui_1721 0.64 -0.5
1,811,437 - Dsui_1721 0.64 -0.3
1,811,494 + Dsui_1721 0.67 -0.5
1,811,554 + Dsui_1721 0.70 +0.0
1,811,568 - Dsui_1721 0.71 +0.3
1,811,574 - Dsui_1721 0.71 -0.1
1,811,662 + Dsui_1721 0.76 -0.7
1,811,721 - Dsui_1721 0.79 +0.1
1,811,834 + Dsui_1721 0.85 -1.7
1,811,849 - Dsui_1721 0.86 -1.2
1,811,905 + Dsui_1721 0.89 +0.3
1,811,913 - Dsui_1721 0.89 -0.2
1,811,913 - Dsui_1721 0.89 -0.1
1,812,020 - +0.2
1,812,055 - +0.7
1,812,129 + +0.2
1,812,291 + +1.8
1,812,349 + -0.9
1,812,438 - Dsui_1722 0.13 +0.3
1,812,461 + Dsui_1722 0.15 -0.7
1,812,500 + Dsui_1722 0.18 -0.1
1,812,596 + Dsui_1722 0.26 -0.4
1,812,625 - Dsui_1722 0.29 -2.1
1,812,664 + Dsui_1722 0.32 -0.5
1,812,664 + Dsui_1722 0.32 -0.8
1,812,674 + Dsui_1722 0.33 -0.7
1,812,723 + Dsui_1722 0.38 +0.2
1,812,732 + Dsui_1722 0.38 -0.4
1,812,740 - Dsui_1722 0.39 -0.5
1,812,767 - Dsui_1722 0.41 -0.5
1,812,779 + Dsui_1722 0.42 +0.2
1,812,796 - Dsui_1722 0.44 -0.2
1,812,843 + Dsui_1722 0.48 -0.8
1,812,851 - Dsui_1722 0.49 +0.5
1,812,950 + Dsui_1722 0.57 -1.2
1,813,019 - Dsui_1722 0.64 -0.7
1,813,082 - Dsui_1722 0.69 -0.2
1,813,128 - Dsui_1722 0.73 -1.4
1,813,240 + Dsui_1722 0.83 -0.8
1,813,263 - Dsui_1722 0.85 -1.1
1,813,265 + Dsui_1722 0.85 -0.8
1,813,294 + Dsui_1722 0.88 -0.9
1,813,297 - Dsui_1722 0.88 -0.8
1,813,302 - Dsui_1722 0.88 -0.3
1,813,307 - Dsui_1722 0.89 -1.0
1,813,326 - -1.8
1,813,326 - -1.3
1,813,380 + -1.0
1,813,404 + -0.3
1,813,412 - -0.3
1,813,496 + +0.2
1,813,630 - -2.0
1,813,670 - Dsui_1723 0.12 -0.5
1,813,757 + Dsui_1723 0.16 -1.6
1,813,795 + Dsui_1723 0.18 -0.2
1,813,930 + Dsui_1723 0.24 -1.3
1,813,930 + Dsui_1723 0.24 -0.5
1,813,930 + Dsui_1723 0.24 -0.6
1,814,053 - Dsui_1723 0.30 -0.4
1,814,074 - Dsui_1723 0.31 -0.1
1,814,115 + Dsui_1723 0.33 -0.5
1,814,216 + Dsui_1723 0.38 -1.3
1,814,306 - +2.5
1,814,344 + Dsui_1723 0.44 -0.3
1,814,349 + Dsui_1723 0.44 -0.0
1,814,418 - Dsui_1723 0.48 +0.2
1,814,419 + Dsui_1723 0.48 -1.4
1,814,419 + Dsui_1723 0.48 -0.9
1,814,419 + Dsui_1723 0.48 -0.9
1,814,419 + Dsui_1723 0.48 -0.2
1,814,419 + Dsui_1723 0.48 -0.8
1,814,427 - Dsui_1723 0.48 -0.9

Or see this region's nucleotide sequence