Strain Fitness in Dechlorosoma suillum PS around Dsui_1424

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1421 and Dsui_1422 are separated by 1 nucleotidesDsui_1422 and Dsui_1423 are separated by 78 nucleotidesDsui_1423 and Dsui_1424 are separated by 8 nucleotidesDsui_1424 and Dsui_1425 are separated by 69 nucleotidesDsui_1425 and Dsui_1426 are separated by 23 nucleotides Dsui_1421: Dsui_1421 - HIT family hydrolase, diadenosine tetraphosphate hydrolase, at 1,475,411 to 1,475,770 _1421 Dsui_1422: Dsui_1422 - twin arginine-targeting protein translocase, TatA/E family, at 1,475,772 to 1,475,996 _1422 Dsui_1423: Dsui_1423 - twin arginine-targeting protein translocase TatB, at 1,476,075 to 1,476,458 _1423 Dsui_1424: Dsui_1424 - twin arginine targeting protein translocase subunit TatC, at 1,476,467 to 1,477,342 _1424 Dsui_1425: Dsui_1425 - putative glutamine amidotransferase, at 1,477,412 to 1,478,236 _1425 Dsui_1426: Dsui_1426 - periplasmic serine protease, Do/DeqQ family, at 1,478,260 to 1,479,414 _1426 Position (kb) 1476 1477 1478Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1475.473 kb on - strand, within Dsui_1421at 1475.473 kb on - strand, within Dsui_1421at 1475.630 kb on + strand, within Dsui_1421at 1475.990 kb on + strandat 1475.990 kb on + strandat 1475.998 kb on - strandat 1475.998 kb on - strandat 1477.307 kb on + strandat 1477.514 kb on + strandat 1477.514 kb on + strand, within Dsui_1425at 1477.542 kb on + strand, within Dsui_1425at 1477.626 kb on + strand, within Dsui_1425at 1477.680 kb on - strand, within Dsui_1425at 1477.682 kb on - strand, within Dsui_1425at 1477.965 kb on + strand, within Dsui_1425at 1477.998 kb on - strand, within Dsui_1425at 1478.058 kb on + strand, within Dsui_1425at 1478.069 kb on + strand, within Dsui_1425

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,475,473 - Dsui_1421 0.17 -4.5
1,475,473 - Dsui_1421 0.17 -1.7
1,475,630 + Dsui_1421 0.61 +0.2
1,475,990 + -0.4
1,475,990 + +0.1
1,475,998 - -0.3
1,475,998 - +0.2
1,477,307 + +0.2
1,477,514 + +0.5
1,477,514 + Dsui_1425 0.12 +0.4
1,477,542 + Dsui_1425 0.16 +0.7
1,477,626 + Dsui_1425 0.26 +0.1
1,477,680 - Dsui_1425 0.32 +0.4
1,477,682 - Dsui_1425 0.33 +0.4
1,477,965 + Dsui_1425 0.67 +2.3
1,477,998 - Dsui_1425 0.71 +0.8
1,478,058 + Dsui_1425 0.78 +0.1
1,478,069 + Dsui_1425 0.80 +1.4

Or see this region's nucleotide sequence