Strain Fitness in Dechlorosoma suillum PS around Dsui_1220

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1218 and Dsui_1219 are separated by 56 nucleotidesDsui_1219 and Dsui_1220 are separated by 136 nucleotidesDsui_1220 and Dsui_1221 are separated by 163 nucleotidesDsui_1221 and Dsui_1222 are separated by 45 nucleotides Dsui_1218: Dsui_1218 - O-6-methylguanine DNA methyltransferase, at 1,274,135 to 1,274,623 _1218 Dsui_1219: Dsui_1219 - aspartyl-tRNA synthetase, at 1,274,680 to 1,275,261 _1219 Dsui_1220: Dsui_1220 - gamma-glutamyl phosphate reductase, at 1,275,398 to 1,276,654 _1220 Dsui_1221: Dsui_1221 - hypothetical protein, at 1,276,818 to 1,277,090 _1221 Dsui_1222: Dsui_1222 - DNA polymerase III, delta subunit, at 1,277,136 to 1,278,137 _1222 Position (kb) 1275 1276 1277Strain fitness (log2 ratio) -2 -1 0 1at 1274.589 kb on + strandat 1274.589 kb on + strandat 1274.670 kb on + strandat 1274.678 kb on - strandat 1274.681 kb on + strandat 1274.725 kb on - strandat 1274.735 kb on - strandat 1274.762 kb on - strand, within Dsui_1219at 1274.900 kb on + strand, within Dsui_1219at 1274.996 kb on + strand, within Dsui_1219at 1275.076 kb on + strand, within Dsui_1219at 1275.089 kb on + strand, within Dsui_1219at 1275.089 kb on + strand, within Dsui_1219at 1275.150 kb on + strand, within Dsui_1219at 1275.218 kb on + strandat 1275.309 kb on - strandat 1275.309 kb on - strandat 1275.309 kb on - strandat 1275.309 kb on - strandat 1275.319 kb on - strandat 1275.394 kb on + strandat 1276.691 kb on + strandat 1276.757 kb on - strandat 1276.822 kb on + strandat 1276.830 kb on - strandat 1276.848 kb on + strand, within Dsui_1221at 1276.920 kb on + strand, within Dsui_1221at 1276.937 kb on + strand, within Dsui_1221at 1277.085 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,274,589 + -0.3
1,274,589 + +0.2
1,274,670 + -0.5
1,274,678 - -0.0
1,274,681 + +0.4
1,274,725 - +0.5
1,274,735 - +1.0
1,274,762 - Dsui_1219 0.14 +0.7
1,274,900 + Dsui_1219 0.38 +0.1
1,274,996 + Dsui_1219 0.54 +0.2
1,275,076 + Dsui_1219 0.68 -1.3
1,275,089 + Dsui_1219 0.70 -2.0
1,275,089 + Dsui_1219 0.70 +0.3
1,275,150 + Dsui_1219 0.81 +0.1
1,275,218 + -0.1
1,275,309 - +0.5
1,275,309 - +0.7
1,275,309 - -0.3
1,275,309 - +0.2
1,275,319 - -0.2
1,275,394 + +0.0
1,276,691 + -0.1
1,276,757 - +0.1
1,276,822 + -1.7
1,276,830 - -1.4
1,276,848 + Dsui_1221 0.11 -0.9
1,276,920 + Dsui_1221 0.37 -1.3
1,276,937 + Dsui_1221 0.44 -1.1
1,277,085 + -0.2

Or see this region's nucleotide sequence