Strain Fitness in Dechlorosoma suillum PS around Dsui_1175

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1173 and Dsui_1174 overlap by 4 nucleotidesDsui_1174 and Dsui_1175 overlap by 4 nucleotidesDsui_1175 and Dsui_1176 are separated by 283 nucleotidesDsui_1176 and Dsui_1177 are separated by 109 nucleotides Dsui_1173: Dsui_1173 - thiol-disulfide isomerase-like thioredoxin, at 1,228,440 to 1,229,024 _1173 Dsui_1174: Dsui_1174 - uncharacterized protein involved in biosynthesis of c-type cytochromes, at 1,229,021 to 1,229,536 _1174 Dsui_1175: Dsui_1175 - cytochrome c-type biogenesis protein CcmI, at 1,229,533 to 1,230,396 _1175 Dsui_1176: Dsui_1176 - periplasmic nitrate/nitrite reductase c-type cytochrome, NapC/NirT family, at 1,230,680 to 1,231,270 _1176 Dsui_1177: Dsui_1177 - Ethylbenzene dehydrogenase, at 1,231,380 to 1,232,249 _1177 Position (kb) 1229 1230 1231Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1229.023 kb on - strandat 1229.596 kb on + strandat 1229.634 kb on + strand, within Dsui_1175at 1229.880 kb on + strand, within Dsui_1175at 1230.121 kb on + strand, within Dsui_1175at 1230.139 kb on - strandat 1230.194 kb on + strand, within Dsui_1175at 1230.272 kb on + strand, within Dsui_1175at 1230.342 kb on - strandat 1230.342 kb on - strandat 1230.466 kb on + strandat 1230.525 kb on - strandat 1230.560 kb on + strandat 1230.568 kb on - strandat 1230.605 kb on - strandat 1230.648 kb on - strandat 1230.721 kb on - strandat 1230.722 kb on - strandat 1230.722 kb on - strandat 1230.754 kb on + strand, within Dsui_1176at 1230.819 kb on + strand, within Dsui_1176at 1230.825 kb on + strand, within Dsui_1176at 1230.825 kb on + strand, within Dsui_1176at 1230.875 kb on + strand, within Dsui_1176at 1230.964 kb on - strand, within Dsui_1176at 1230.995 kb on - strand, within Dsui_1176at 1231.060 kb on + strand, within Dsui_1176at 1231.073 kb on - strand, within Dsui_1176at 1231.142 kb on + strand, within Dsui_1176at 1231.203 kb on + strand, within Dsui_1176at 1231.221 kb on + strandat 1231.227 kb on - strandat 1231.238 kb on + strandat 1231.238 kb on + strandat 1231.239 kb on - strandat 1231.246 kb on - strandat 1231.246 kb on - strandat 1231.246 kb on - strandat 1231.246 kb on - strandat 1231.292 kb on + strandat 1231.311 kb on + strandat 1231.380 kb on - strandat 1231.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,229,023 - -1.0
1,229,596 + -2.8
1,229,634 + Dsui_1175 0.12 -1.0
1,229,880 + Dsui_1175 0.40 -2.0
1,230,121 + Dsui_1175 0.68 -1.6
1,230,139 - +0.6
1,230,194 + Dsui_1175 0.77 -1.7
1,230,272 + Dsui_1175 0.86 -1.9
1,230,342 - +1.1
1,230,342 - -0.0
1,230,466 + -0.0
1,230,525 - -0.3
1,230,560 + +0.1
1,230,568 - +1.0
1,230,605 - +0.1
1,230,648 - -0.3
1,230,721 - +0.5
1,230,722 - +1.6
1,230,722 - +2.1
1,230,754 + Dsui_1176 0.13 +0.4
1,230,819 + Dsui_1176 0.24 +0.7
1,230,825 + Dsui_1176 0.25 -0.5
1,230,825 + Dsui_1176 0.25 -0.1
1,230,875 + Dsui_1176 0.33 -0.6
1,230,964 - Dsui_1176 0.48 -0.5
1,230,995 - Dsui_1176 0.53 -0.1
1,231,060 + Dsui_1176 0.64 -0.0
1,231,073 - Dsui_1176 0.66 +0.2
1,231,142 + Dsui_1176 0.78 +0.6
1,231,203 + Dsui_1176 0.88 +0.0
1,231,221 + +1.1
1,231,227 - -0.8
1,231,238 + +0.4
1,231,238 + -0.1
1,231,239 - +1.1
1,231,246 - -0.4
1,231,246 - +1.4
1,231,246 - -0.6
1,231,246 - +1.2
1,231,292 + -0.3
1,231,311 + -0.6
1,231,380 - +0.2
1,231,380 - +0.7

Or see this region's nucleotide sequence