Strain Fitness in Dechlorosoma suillum PS around Dsui_1163

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1162 and Dsui_1163 are separated by 39 nucleotidesDsui_1163 and Dsui_1164 are separated by 49 nucleotidesDsui_1164 and Dsui_1165 overlap by 8 nucleotides Dsui_1162: Dsui_1162 - (NiFe) hydrogenase maturation protein HypF, at 1,217,143 to 1,219,482 _1162 Dsui_1163: Dsui_1163 - hydrogenase accessory protein HypB, at 1,219,522 to 1,220,718 _1163 Dsui_1164: Dsui_1164 - hydrogenase nickel insertion protein HypA, at 1,220,768 to 1,221,112 _1164 Dsui_1165: Dsui_1165 - Ni,Fe-hydrogenase I large subunit, at 1,221,105 to 1,222,094 _1165 Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -1 0 1 2 3at 1218.526 kb on + strand, within Dsui_1162at 1218.529 kb on - strand, within Dsui_1162at 1218.575 kb on - strand, within Dsui_1162at 1218.674 kb on + strandat 1218.800 kb on - strand, within Dsui_1162at 1218.841 kb on - strandat 1218.859 kb on - strand, within Dsui_1162at 1218.988 kb on - strand, within Dsui_1162at 1219.013 kb on - strand, within Dsui_1162at 1219.153 kb on + strand, within Dsui_1162at 1219.169 kb on + strand, within Dsui_1162at 1219.339 kb on - strandat 1219.425 kb on + strandat 1219.461 kb on + strandat 1219.485 kb on - strandat 1219.602 kb on - strandat 1219.622 kb on + strandat 1219.715 kb on + strandat 1219.762 kb on - strand, within Dsui_1163at 1219.801 kb on + strandat 1219.836 kb on + strand, within Dsui_1163at 1219.857 kb on + strandat 1219.863 kb on + strandat 1219.929 kb on + strand, within Dsui_1163at 1219.952 kb on - strand, within Dsui_1163at 1220.218 kb on + strand, within Dsui_1163at 1220.236 kb on - strand, within Dsui_1163at 1220.402 kb on - strand, within Dsui_1163at 1220.409 kb on - strand, within Dsui_1163at 1220.414 kb on - strand, within Dsui_1163at 1220.425 kb on + strand, within Dsui_1163at 1220.456 kb on - strand, within Dsui_1163at 1220.470 kb on + strand, within Dsui_1163at 1220.565 kb on + strand, within Dsui_1163at 1220.585 kb on - strand, within Dsui_1163at 1220.610 kb on - strandat 1220.612 kb on + strandat 1220.615 kb on - strandat 1220.683 kb on + strandat 1220.711 kb on + strandat 1220.719 kb on - strandat 1220.724 kb on - strandat 1220.849 kb on + strandat 1220.885 kb on + strand, within Dsui_1164at 1220.896 kb on + strand, within Dsui_1164at 1220.927 kb on - strand, within Dsui_1164at 1220.949 kb on + strand, within Dsui_1164at 1220.954 kb on + strandat 1220.990 kb on - strand, within Dsui_1164at 1221.005 kb on - strand, within Dsui_1164at 1221.035 kb on - strand, within Dsui_1164at 1221.044 kb on + strandat 1221.052 kb on - strand, within Dsui_1164at 1221.054 kb on - strand, within Dsui_1164at 1221.095 kb on - strandat 1221.095 kb on - strandat 1221.138 kb on - strandat 1221.159 kb on + strandat 1221.293 kb on - strand, within Dsui_1165at 1221.476 kb on + strandat 1221.494 kb on - strandat 1221.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,218,526 + Dsui_1162 0.59 +0.6
1,218,529 - Dsui_1162 0.59 +1.3
1,218,575 - Dsui_1162 0.61 +1.3
1,218,674 + +0.5
1,218,800 - Dsui_1162 0.71 +0.6
1,218,841 - +0.5
1,218,859 - Dsui_1162 0.73 -0.0
1,218,988 - Dsui_1162 0.79 +0.6
1,219,013 - Dsui_1162 0.80 +0.1
1,219,153 + Dsui_1162 0.86 +0.7
1,219,169 + Dsui_1162 0.87 -1.6
1,219,339 - -0.1
1,219,425 + +0.2
1,219,461 + +0.6
1,219,485 - +1.6
1,219,602 - +0.1
1,219,622 + +1.3
1,219,715 + -0.0
1,219,762 - Dsui_1163 0.20 +1.6
1,219,801 + +0.8
1,219,836 + Dsui_1163 0.26 +0.6
1,219,857 + +0.6
1,219,863 + +1.6
1,219,929 + Dsui_1163 0.34 -0.4
1,219,952 - Dsui_1163 0.36 +0.3
1,220,218 + Dsui_1163 0.58 +1.1
1,220,236 - Dsui_1163 0.60 +1.0
1,220,402 - Dsui_1163 0.74 +0.7
1,220,409 - Dsui_1163 0.74 +0.4
1,220,414 - Dsui_1163 0.75 +0.8
1,220,425 + Dsui_1163 0.75 +1.0
1,220,456 - Dsui_1163 0.78 +0.3
1,220,470 + Dsui_1163 0.79 +0.2
1,220,565 + Dsui_1163 0.87 +2.9
1,220,585 - Dsui_1163 0.89 +0.3
1,220,610 - +2.6
1,220,612 + +1.0
1,220,615 - +0.6
1,220,683 + +1.6
1,220,711 + -0.2
1,220,719 - +0.4
1,220,724 - +0.6
1,220,849 + +0.6
1,220,885 + Dsui_1164 0.34 -0.0
1,220,896 + Dsui_1164 0.37 +0.6
1,220,927 - Dsui_1164 0.46 +0.9
1,220,949 + Dsui_1164 0.52 +0.9
1,220,954 + -0.0
1,220,990 - Dsui_1164 0.64 -0.4
1,221,005 - Dsui_1164 0.69 +0.5
1,221,035 - Dsui_1164 0.77 +0.1
1,221,044 + +1.6
1,221,052 - Dsui_1164 0.82 +0.9
1,221,054 - Dsui_1164 0.83 +0.6
1,221,095 - +0.7
1,221,095 - +0.5
1,221,138 - -0.3
1,221,159 + +1.2
1,221,293 - Dsui_1165 0.19 +0.4
1,221,476 + +0.6
1,221,494 - -0.4
1,221,603 - +0.2

Or see this region's nucleotide sequence