Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1159 and Dsui_1160 are separated by 79 nucleotides Dsui_1160 and Dsui_1161 are separated by 2 nucleotides Dsui_1161 and Dsui_1162 are separated by 9 nucleotides Dsui_1162 and Dsui_1163 are separated by 39 nucleotides
Dsui_1159: Dsui_1159 - hydrogenase expression/formation protein HypD, at 1,215,031 to 1,216,161
_1159
Dsui_1160: Dsui_1160 - hydrogenase assembly chaperone HypC/HupF, at 1,216,241 to 1,216,486
_1160
Dsui_1161: Dsui_1161 - transglutaminase-like enzyme, predicted cysteine protease, at 1,216,489 to 1,217,133
_1161
Dsui_1162: Dsui_1162 - (NiFe) hydrogenase maturation protein HypF, at 1,217,143 to 1,219,482
_1162
Dsui_1163: Dsui_1163 - hydrogenase accessory protein HypB, at 1,219,522 to 1,220,718
_1163
Position (kb)
1217
1218
1219
1220 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1216.240 kb on - strand at 1216.240 kb on - strand at 1216.247 kb on - strand at 1216.268 kb on + strand, within Dsui_1160 at 1216.326 kb on + strand, within Dsui_1160 at 1216.334 kb on - strand, within Dsui_1160 at 1216.337 kb on + strand, within Dsui_1160 at 1216.386 kb on + strand at 1216.390 kb on + strand, within Dsui_1160 at 1216.487 kb on + strand at 1216.495 kb on - strand at 1216.552 kb on + strand at 1216.600 kb on - strand, within Dsui_1161 at 1216.659 kb on - strand, within Dsui_1161 at 1216.659 kb on - strand, within Dsui_1161 at 1216.703 kb on - strand, within Dsui_1161 at 1216.740 kb on - strand, within Dsui_1161 at 1216.786 kb on - strand, within Dsui_1161 at 1216.909 kb on - strand, within Dsui_1161 at 1216.924 kb on + strand at 1217.032 kb on + strand, within Dsui_1161 at 1217.320 kb on - strand at 1217.442 kb on + strand at 1217.459 kb on + strand at 1217.506 kb on - strand, within Dsui_1162 at 1217.516 kb on - strand, within Dsui_1162 at 1217.520 kb on + strand at 1217.529 kb on - strand, within Dsui_1162 at 1217.616 kb on + strand at 1217.624 kb on - strand, within Dsui_1162 at 1217.624 kb on - strand, within Dsui_1162 at 1217.624 kb on - strand, within Dsui_1162 at 1217.633 kb on + strand, within Dsui_1162 at 1217.677 kb on + strand at 1217.677 kb on + strand, within Dsui_1162 at 1217.797 kb on + strand at 1217.968 kb on - strand, within Dsui_1162 at 1218.021 kb on + strand at 1218.048 kb on + strand at 1218.161 kb on + strand, within Dsui_1162 at 1218.232 kb on + strand, within Dsui_1162 at 1218.489 kb on - strand, within Dsui_1162 at 1218.526 kb on + strand, within Dsui_1162 at 1218.529 kb on - strand, within Dsui_1162 at 1218.575 kb on - strand, within Dsui_1162 at 1218.674 kb on + strand at 1218.800 kb on - strand, within Dsui_1162 at 1218.841 kb on - strand at 1218.859 kb on - strand, within Dsui_1162 at 1218.988 kb on - strand, within Dsui_1162 at 1219.013 kb on - strand, within Dsui_1162 at 1219.153 kb on + strand, within Dsui_1162 at 1219.169 kb on + strand, within Dsui_1162 at 1219.339 kb on - strand at 1219.425 kb on + strand at 1219.461 kb on + strand at 1219.485 kb on - strand at 1219.602 kb on - strand at 1219.622 kb on + strand at 1219.715 kb on + strand at 1219.762 kb on - strand, within Dsui_1163 at 1219.801 kb on + strand at 1219.836 kb on + strand, within Dsui_1163 at 1219.857 kb on + strand at 1219.863 kb on + strand at 1219.929 kb on + strand, within Dsui_1163 at 1219.952 kb on - strand, within Dsui_1163 at 1220.218 kb on + strand, within Dsui_1163 at 1220.236 kb on - strand, within Dsui_1163 at 1220.402 kb on - strand, within Dsui_1163 at 1220.409 kb on - strand, within Dsui_1163 at 1220.414 kb on - strand, within Dsui_1163 at 1220.425 kb on + strand, within Dsui_1163 at 1220.456 kb on - strand, within Dsui_1163 at 1220.470 kb on + strand, within Dsui_1163
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 1,216,240 - -1.6 1,216,240 - +0.3 1,216,247 - +0.1 1,216,268 + Dsui_1160 0.11 +0.3 1,216,326 + Dsui_1160 0.35 -0.7 1,216,334 - Dsui_1160 0.38 +1.0 1,216,337 + Dsui_1160 0.39 +0.2 1,216,386 + +1.0 1,216,390 + Dsui_1160 0.61 -0.4 1,216,487 + +1.1 1,216,495 - +1.5 1,216,552 + +1.1 1,216,600 - Dsui_1161 0.17 -0.0 1,216,659 - Dsui_1161 0.26 +0.1 1,216,659 - Dsui_1161 0.26 +0.1 1,216,703 - Dsui_1161 0.33 -0.3 1,216,740 - Dsui_1161 0.39 +0.3 1,216,786 - Dsui_1161 0.46 +0.3 1,216,909 - Dsui_1161 0.65 -0.3 1,216,924 + +1.4 1,217,032 + Dsui_1161 0.84 +0.2 1,217,320 - +0.5 1,217,442 + +1.5 1,217,459 + +3.1 1,217,506 - Dsui_1162 0.16 -1.6 1,217,516 - Dsui_1162 0.16 +1.3 1,217,520 + +2.3 1,217,529 - Dsui_1162 0.16 +2.1 1,217,616 + +1.5 1,217,624 - Dsui_1162 0.21 +0.3 1,217,624 - Dsui_1162 0.21 +0.8 1,217,624 - Dsui_1162 0.21 +1.0 1,217,633 + Dsui_1162 0.21 -0.0 1,217,677 + +2.1 1,217,677 + Dsui_1162 0.23 +0.1 1,217,797 + -0.0 1,217,968 - Dsui_1162 0.35 +0.7 1,218,021 + +2.5 1,218,048 + +0.2 1,218,161 + Dsui_1162 0.44 +1.2 1,218,232 + Dsui_1162 0.47 +1.3 1,218,489 - Dsui_1162 0.58 +1.2 1,218,526 + Dsui_1162 0.59 +0.6 1,218,529 - Dsui_1162 0.59 +1.3 1,218,575 - Dsui_1162 0.61 +1.3 1,218,674 + +0.5 1,218,800 - Dsui_1162 0.71 +0.6 1,218,841 - +0.5 1,218,859 - Dsui_1162 0.73 -0.0 1,218,988 - Dsui_1162 0.79 +0.6 1,219,013 - Dsui_1162 0.80 +0.1 1,219,153 + Dsui_1162 0.86 +0.7 1,219,169 + Dsui_1162 0.87 -1.6 1,219,339 - -0.1 1,219,425 + +0.2 1,219,461 + +0.6 1,219,485 - +1.6 1,219,602 - +0.1 1,219,622 + +1.3 1,219,715 + -0.0 1,219,762 - Dsui_1163 0.20 +1.6 1,219,801 + +0.8 1,219,836 + Dsui_1163 0.26 +0.6 1,219,857 + +0.6 1,219,863 + +1.6 1,219,929 + Dsui_1163 0.34 -0.4 1,219,952 - Dsui_1163 0.36 +0.3 1,220,218 + Dsui_1163 0.58 +1.1 1,220,236 - Dsui_1163 0.60 +1.0 1,220,402 - Dsui_1163 0.74 +0.7 1,220,409 - Dsui_1163 0.74 +0.4 1,220,414 - Dsui_1163 0.75 +0.8 1,220,425 + Dsui_1163 0.75 +1.0 1,220,456 - Dsui_1163 0.78 +0.3 1,220,470 + Dsui_1163 0.79 +0.2
Or see this region's nucleotide sequence