Strain Fitness in Dechlorosoma suillum PS around Dsui_1162

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1159 and Dsui_1160 are separated by 79 nucleotidesDsui_1160 and Dsui_1161 are separated by 2 nucleotidesDsui_1161 and Dsui_1162 are separated by 9 nucleotidesDsui_1162 and Dsui_1163 are separated by 39 nucleotides Dsui_1159: Dsui_1159 - hydrogenase expression/formation protein HypD, at 1,215,031 to 1,216,161 _1159 Dsui_1160: Dsui_1160 - hydrogenase assembly chaperone HypC/HupF, at 1,216,241 to 1,216,486 _1160 Dsui_1161: Dsui_1161 - transglutaminase-like enzyme, predicted cysteine protease, at 1,216,489 to 1,217,133 _1161 Dsui_1162: Dsui_1162 - (NiFe) hydrogenase maturation protein HypF, at 1,217,143 to 1,219,482 _1162 Dsui_1163: Dsui_1163 - hydrogenase accessory protein HypB, at 1,219,522 to 1,220,718 _1163 Position (kb) 1217 1218 1219 1220Strain fitness (log2 ratio) -1 0 1 2 3at 1216.240 kb on - strandat 1216.240 kb on - strandat 1216.247 kb on - strandat 1216.268 kb on + strand, within Dsui_1160at 1216.326 kb on + strand, within Dsui_1160at 1216.334 kb on - strand, within Dsui_1160at 1216.337 kb on + strand, within Dsui_1160at 1216.386 kb on + strandat 1216.390 kb on + strand, within Dsui_1160at 1216.487 kb on + strandat 1216.495 kb on - strandat 1216.552 kb on + strandat 1216.600 kb on - strand, within Dsui_1161at 1216.659 kb on - strand, within Dsui_1161at 1216.659 kb on - strand, within Dsui_1161at 1216.703 kb on - strand, within Dsui_1161at 1216.740 kb on - strand, within Dsui_1161at 1216.786 kb on - strand, within Dsui_1161at 1216.909 kb on - strand, within Dsui_1161at 1216.924 kb on + strandat 1217.032 kb on + strand, within Dsui_1161at 1217.320 kb on - strandat 1217.442 kb on + strandat 1217.459 kb on + strandat 1217.506 kb on - strand, within Dsui_1162at 1217.516 kb on - strand, within Dsui_1162at 1217.520 kb on + strandat 1217.529 kb on - strand, within Dsui_1162at 1217.616 kb on + strandat 1217.624 kb on - strand, within Dsui_1162at 1217.624 kb on - strand, within Dsui_1162at 1217.624 kb on - strand, within Dsui_1162at 1217.633 kb on + strand, within Dsui_1162at 1217.677 kb on + strandat 1217.677 kb on + strand, within Dsui_1162at 1217.797 kb on + strandat 1217.968 kb on - strand, within Dsui_1162at 1218.021 kb on + strandat 1218.048 kb on + strandat 1218.161 kb on + strand, within Dsui_1162at 1218.232 kb on + strand, within Dsui_1162at 1218.489 kb on - strand, within Dsui_1162at 1218.526 kb on + strand, within Dsui_1162at 1218.529 kb on - strand, within Dsui_1162at 1218.575 kb on - strand, within Dsui_1162at 1218.674 kb on + strandat 1218.800 kb on - strand, within Dsui_1162at 1218.841 kb on - strandat 1218.859 kb on - strand, within Dsui_1162at 1218.988 kb on - strand, within Dsui_1162at 1219.013 kb on - strand, within Dsui_1162at 1219.153 kb on + strand, within Dsui_1162at 1219.169 kb on + strand, within Dsui_1162at 1219.339 kb on - strandat 1219.425 kb on + strandat 1219.461 kb on + strandat 1219.485 kb on - strandat 1219.602 kb on - strandat 1219.622 kb on + strandat 1219.715 kb on + strandat 1219.762 kb on - strand, within Dsui_1163at 1219.801 kb on + strandat 1219.836 kb on + strand, within Dsui_1163at 1219.857 kb on + strandat 1219.863 kb on + strandat 1219.929 kb on + strand, within Dsui_1163at 1219.952 kb on - strand, within Dsui_1163at 1220.218 kb on + strand, within Dsui_1163at 1220.236 kb on - strand, within Dsui_1163at 1220.402 kb on - strand, within Dsui_1163at 1220.409 kb on - strand, within Dsui_1163at 1220.414 kb on - strand, within Dsui_1163at 1220.425 kb on + strand, within Dsui_1163at 1220.456 kb on - strand, within Dsui_1163at 1220.470 kb on + strand, within Dsui_1163

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,216,240 - -1.6
1,216,240 - +0.3
1,216,247 - +0.1
1,216,268 + Dsui_1160 0.11 +0.3
1,216,326 + Dsui_1160 0.35 -0.7
1,216,334 - Dsui_1160 0.38 +1.0
1,216,337 + Dsui_1160 0.39 +0.2
1,216,386 + +1.0
1,216,390 + Dsui_1160 0.61 -0.4
1,216,487 + +1.1
1,216,495 - +1.5
1,216,552 + +1.1
1,216,600 - Dsui_1161 0.17 -0.0
1,216,659 - Dsui_1161 0.26 +0.1
1,216,659 - Dsui_1161 0.26 +0.1
1,216,703 - Dsui_1161 0.33 -0.3
1,216,740 - Dsui_1161 0.39 +0.3
1,216,786 - Dsui_1161 0.46 +0.3
1,216,909 - Dsui_1161 0.65 -0.3
1,216,924 + +1.4
1,217,032 + Dsui_1161 0.84 +0.2
1,217,320 - +0.5
1,217,442 + +1.5
1,217,459 + +3.1
1,217,506 - Dsui_1162 0.16 -1.6
1,217,516 - Dsui_1162 0.16 +1.3
1,217,520 + +2.3
1,217,529 - Dsui_1162 0.16 +2.1
1,217,616 + +1.5
1,217,624 - Dsui_1162 0.21 +0.3
1,217,624 - Dsui_1162 0.21 +0.8
1,217,624 - Dsui_1162 0.21 +1.0
1,217,633 + Dsui_1162 0.21 -0.0
1,217,677 + +2.1
1,217,677 + Dsui_1162 0.23 +0.1
1,217,797 + -0.0
1,217,968 - Dsui_1162 0.35 +0.7
1,218,021 + +2.5
1,218,048 + +0.2
1,218,161 + Dsui_1162 0.44 +1.2
1,218,232 + Dsui_1162 0.47 +1.3
1,218,489 - Dsui_1162 0.58 +1.2
1,218,526 + Dsui_1162 0.59 +0.6
1,218,529 - Dsui_1162 0.59 +1.3
1,218,575 - Dsui_1162 0.61 +1.3
1,218,674 + +0.5
1,218,800 - Dsui_1162 0.71 +0.6
1,218,841 - +0.5
1,218,859 - Dsui_1162 0.73 -0.0
1,218,988 - Dsui_1162 0.79 +0.6
1,219,013 - Dsui_1162 0.80 +0.1
1,219,153 + Dsui_1162 0.86 +0.7
1,219,169 + Dsui_1162 0.87 -1.6
1,219,339 - -0.1
1,219,425 + +0.2
1,219,461 + +0.6
1,219,485 - +1.6
1,219,602 - +0.1
1,219,622 + +1.3
1,219,715 + -0.0
1,219,762 - Dsui_1163 0.20 +1.6
1,219,801 + +0.8
1,219,836 + Dsui_1163 0.26 +0.6
1,219,857 + +0.6
1,219,863 + +1.6
1,219,929 + Dsui_1163 0.34 -0.4
1,219,952 - Dsui_1163 0.36 +0.3
1,220,218 + Dsui_1163 0.58 +1.1
1,220,236 - Dsui_1163 0.60 +1.0
1,220,402 - Dsui_1163 0.74 +0.7
1,220,409 - Dsui_1163 0.74 +0.4
1,220,414 - Dsui_1163 0.75 +0.8
1,220,425 + Dsui_1163 0.75 +1.0
1,220,456 - Dsui_1163 0.78 +0.3
1,220,470 + Dsui_1163 0.79 +0.2

Or see this region's nucleotide sequence