Strain Fitness in Dechlorosoma suillum PS around Dsui_1024

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1022 and Dsui_1023 overlap by 4 nucleotidesDsui_1023 and Dsui_1024 are separated by 13 nucleotidesDsui_1024 and Dsui_1025 are separated by 170 nucleotides Dsui_1022: Dsui_1022 - cell division protein, at 1,054,727 to 1,055,632 _1022 Dsui_1023: Dsui_1023 - putative ATPase involved in cell division, at 1,055,629 to 1,056,309 _1023 Dsui_1024: Dsui_1024 - signal recognition particle-docking protein FtsY, at 1,056,323 to 1,057,327 _1024 Dsui_1025: Dsui_1025 - putative Zn-dependent peptidase, at 1,057,498 to 1,058,865 _1025 Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -2 -1 0 1at 1055.442 kb on - strand, within Dsui_1022at 1055.487 kb on - strand, within Dsui_1022at 1055.527 kb on - strand, within Dsui_1022at 1055.556 kb on + strandat 1055.564 kb on - strandat 1055.639 kb on + strandat 1055.765 kb on + strand, within Dsui_1023at 1055.765 kb on + strand, within Dsui_1023at 1055.765 kb on + strand, within Dsui_1023at 1055.765 kb on + strand, within Dsui_1023at 1055.773 kb on - strand, within Dsui_1023at 1055.773 kb on - strand, within Dsui_1023at 1055.778 kb on - strand, within Dsui_1023at 1055.848 kb on + strand, within Dsui_1023at 1055.856 kb on - strand, within Dsui_1023at 1055.883 kb on - strand, within Dsui_1023at 1055.912 kb on + strand, within Dsui_1023at 1055.936 kb on + strand, within Dsui_1023at 1055.941 kb on + strand, within Dsui_1023at 1055.973 kb on + strand, within Dsui_1023at 1056.004 kb on - strand, within Dsui_1023at 1056.073 kb on + strand, within Dsui_1023at 1056.124 kb on + strand, within Dsui_1023at 1056.129 kb on + strandat 1056.139 kb on + strand, within Dsui_1023at 1056.170 kb on + strand, within Dsui_1023at 1056.188 kb on - strand, within Dsui_1023at 1056.261 kb on - strandat 1056.283 kb on + strandat 1056.283 kb on - strandat 1056.291 kb on - strandat 1056.314 kb on + strandat 1056.348 kb on - strandat 1057.377 kb on - strandat 1057.381 kb on - strandat 1057.595 kb on + strandat 1057.652 kb on + strand, within Dsui_1025at 1057.652 kb on + strand, within Dsui_1025at 1057.942 kb on + strand, within Dsui_1025at 1057.983 kb on + strand, within Dsui_1025at 1058.020 kb on + strand, within Dsui_1025at 1058.072 kb on + strand, within Dsui_1025at 1058.072 kb on - strand, within Dsui_1025at 1058.126 kb on + strand, within Dsui_1025at 1058.228 kb on - strandat 1058.291 kb on - strand, within Dsui_1025at 1058.317 kb on - strand, within Dsui_1025

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
1,055,442 - Dsui_1022 0.79 -0.9
1,055,487 - Dsui_1022 0.84 +1.0
1,055,527 - Dsui_1022 0.88 -1.1
1,055,556 + -1.6
1,055,564 - -0.9
1,055,639 + -0.7
1,055,765 + Dsui_1023 0.20 +0.3
1,055,765 + Dsui_1023 0.20 -1.1
1,055,765 + Dsui_1023 0.20 -1.8
1,055,765 + Dsui_1023 0.20 -1.8
1,055,773 - Dsui_1023 0.21 -1.1
1,055,773 - Dsui_1023 0.21 -0.7
1,055,778 - Dsui_1023 0.22 -0.9
1,055,848 + Dsui_1023 0.32 -1.1
1,055,856 - Dsui_1023 0.33 -1.8
1,055,883 - Dsui_1023 0.37 -1.5
1,055,912 + Dsui_1023 0.42 -0.6
1,055,936 + Dsui_1023 0.45 -1.2
1,055,941 + Dsui_1023 0.46 -1.1
1,055,973 + Dsui_1023 0.51 -0.3
1,056,004 - Dsui_1023 0.55 -0.9
1,056,073 + Dsui_1023 0.65 -2.1
1,056,124 + Dsui_1023 0.73 -0.4
1,056,129 + -0.2
1,056,139 + Dsui_1023 0.75 -0.2
1,056,170 + Dsui_1023 0.79 -1.0
1,056,188 - Dsui_1023 0.82 -1.1
1,056,261 - -1.6
1,056,283 + -0.6
1,056,283 - -0.8
1,056,291 - -1.1
1,056,314 + -1.4
1,056,348 - -0.7
1,057,377 - -1.9
1,057,381 - -0.4
1,057,595 + -1.2
1,057,652 + Dsui_1025 0.11 -0.9
1,057,652 + Dsui_1025 0.11 -1.9
1,057,942 + Dsui_1025 0.32 -0.9
1,057,983 + Dsui_1025 0.35 -0.9
1,058,020 + Dsui_1025 0.38 -0.9
1,058,072 + Dsui_1025 0.42 -1.7
1,058,072 - Dsui_1025 0.42 -0.8
1,058,126 + Dsui_1025 0.46 -2.5
1,058,228 - -0.4
1,058,291 - Dsui_1025 0.58 +0.1
1,058,317 - Dsui_1025 0.60 -0.2

Or see this region's nucleotide sequence