Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1003 and Dsui_1004 are separated by 113 nucleotides Dsui_1004 and Dsui_1005 are separated by 88 nucleotides Dsui_1005 and Dsui_1006 are separated by 40 nucleotides
Dsui_1003: Dsui_1003 - phosphoribosylglycinamide formyltransferase 2, at 1,031,262 to 1,032,494
_1003
Dsui_1004: Dsui_1004 - conserved protein of DIM6/NTAB family, at 1,032,608 to 1,033,159
_1004
Dsui_1005: Dsui_1005 - tRNA-Gly, at 1,033,248 to 1,033,321
_1005
Dsui_1006: Dsui_1006 - transcriptional regulator, at 1,033,362 to 1,034,282
_1006
Position (kb)
1032
1033
1034 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1031.647 kb on + strand at 1031.725 kb on - strand, within Dsui_1003 at 1031.748 kb on + strand, within Dsui_1003 at 1031.783 kb on - strand, within Dsui_1003 at 1031.828 kb on + strand at 1031.828 kb on + strand, within Dsui_1003 at 1031.988 kb on - strand, within Dsui_1003 at 1032.031 kb on + strand, within Dsui_1003 at 1032.049 kb on + strand, within Dsui_1003 at 1032.229 kb on - strand, within Dsui_1003 at 1032.384 kb on + strand at 1032.394 kb on - strand at 1032.630 kb on + strand at 1032.710 kb on + strand, within Dsui_1004 at 1032.849 kb on + strand, within Dsui_1004 at 1032.884 kb on - strand at 1032.928 kb on - strand at 1033.006 kb on - strand at 1033.174 kb on + strand at 1033.257 kb on + strand, within Dsui_1005 at 1033.269 kb on + strand, within Dsui_1005 at 1033.277 kb on - strand at 1033.284 kb on + strand, within Dsui_1005 at 1033.349 kb on - strand at 1033.403 kb on - strand at 1033.413 kb on - strand at 1033.712 kb on - strand, within Dsui_1006 at 1033.737 kb on - strand, within Dsui_1006 at 1033.758 kb on - strand, within Dsui_1006 at 1033.845 kb on + strand, within Dsui_1006 at 1033.884 kb on + strand, within Dsui_1006 at 1033.908 kb on - strand, within Dsui_1006 at 1033.985 kb on + strand, within Dsui_1006 at 1033.990 kb on + strand at 1034.149 kb on - strand, within Dsui_1006 at 1034.159 kb on + strand, within Dsui_1006
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 1,031,647 + +1.6 1,031,725 - Dsui_1003 0.38 +0.4 1,031,748 + Dsui_1003 0.39 +0.5 1,031,783 - Dsui_1003 0.42 -0.5 1,031,828 + +2.2 1,031,828 + Dsui_1003 0.46 +0.5 1,031,988 - Dsui_1003 0.59 +1.0 1,032,031 + Dsui_1003 0.62 -1.0 1,032,049 + Dsui_1003 0.64 +0.8 1,032,229 - Dsui_1003 0.78 +0.3 1,032,384 + +0.2 1,032,394 - +0.8 1,032,630 + +2.6 1,032,710 + Dsui_1004 0.18 -0.8 1,032,849 + Dsui_1004 0.44 -0.4 1,032,884 - -0.4 1,032,928 - -0.4 1,033,006 - +0.2 1,033,174 + +0.4 1,033,257 + Dsui_1005 0.12 -0.5 1,033,269 + Dsui_1005 0.28 +0.3 1,033,277 - +0.6 1,033,284 + Dsui_1005 0.49 -0.0 1,033,349 - +0.6 1,033,403 - -0.6 1,033,413 - -0.4 1,033,712 - Dsui_1006 0.38 +0.3 1,033,737 - Dsui_1006 0.41 -0.1 1,033,758 - Dsui_1006 0.43 -0.3 1,033,845 + Dsui_1006 0.52 +0.2 1,033,884 + Dsui_1006 0.57 +0.1 1,033,908 - Dsui_1006 0.59 +0.1 1,033,985 + Dsui_1006 0.68 +0.6 1,033,990 + -0.4 1,034,149 - Dsui_1006 0.85 -0.9 1,034,159 + Dsui_1006 0.87 -1.9
Or see this region's nucleotide sequence