Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0604 and Dsui_0605 are separated by 16 nucleotides Dsui_0605 and Dsui_0606 are separated by 84 nucleotides
Dsui_0604: Dsui_0604 - pilus retraction protein PilT, at 598,978 to 600,021
_0604
Dsui_0605: Dsui_0605 - pilus retraction protein PilT, at 600,038 to 601,174
_0605
Dsui_0606: Dsui_0606 - putative N6-adenine-specific DNA methylase, at 601,259 to 602,431
_0606
Position (kb) 600
601
602 Strain fitness (log2 ratio) -2
-1
0
1
2 at 599.128 kb on + strand, within Dsui_0604 at 599.128 kb on + strand, within Dsui_0604 at 599.154 kb on + strand, within Dsui_0604 at 599.209 kb on - strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.356 kb on - strand, within Dsui_0604 at 599.369 kb on - strand at 599.385 kb on + strand, within Dsui_0604 at 599.387 kb on + strand, within Dsui_0604 at 599.398 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.479 kb on + strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.516 kb on + strand, within Dsui_0604 at 599.542 kb on - strand, within Dsui_0604 at 599.544 kb on + strand, within Dsui_0604 at 599.598 kb on + strand, within Dsui_0604 at 599.755 kb on - strand, within Dsui_0604 at 599.883 kb on - strand, within Dsui_0604 at 600.074 kb on - strand at 600.097 kb on - strand at 600.133 kb on - strand at 600.175 kb on - strand, within Dsui_0605 at 600.206 kb on - strand, within Dsui_0605 at 600.213 kb on + strand, within Dsui_0605 at 600.418 kb on + strand, within Dsui_0605 at 600.545 kb on - strand, within Dsui_0605 at 600.553 kb on - strand, within Dsui_0605 at 600.695 kb on - strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.860 kb on - strand, within Dsui_0605 at 600.968 kb on - strand, within Dsui_0605 at 601.245 kb on - strand at 601.258 kb on - strand at 601.310 kb on - strand at 601.314 kb on + strand at 601.407 kb on - strand, within Dsui_0606 at 601.445 kb on - strand, within Dsui_0606 at 601.560 kb on + strand, within Dsui_0606 at 601.697 kb on + strand, within Dsui_0606 at 601.702 kb on + strand, within Dsui_0606 at 601.882 kb on + strand at 601.986 kb on + strand, within Dsui_0606 at 602.163 kb on - strand, within Dsui_0606
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 599,128 + Dsui_0604 0.14 -1.7 599,128 + Dsui_0604 0.14 -2.2 599,154 + Dsui_0604 0.17 -1.4 599,209 - Dsui_0604 0.22 -0.4 599,291 + Dsui_0604 0.30 -1.5 599,291 + Dsui_0604 0.30 -0.3 599,291 + Dsui_0604 0.30 -0.4 599,291 + Dsui_0604 0.30 -1.1 599,356 - Dsui_0604 0.36 -1.9 599,369 - -0.1 599,385 + Dsui_0604 0.39 -0.5 599,387 + Dsui_0604 0.39 -1.1 599,398 - Dsui_0604 0.40 -0.7 599,447 - Dsui_0604 0.45 -1.7 599,447 - Dsui_0604 0.45 -1.0 599,479 + Dsui_0604 0.48 -0.9 599,487 - Dsui_0604 0.49 -0.3 599,487 - Dsui_0604 0.49 -1.7 599,516 + Dsui_0604 0.52 -1.1 599,542 - Dsui_0604 0.54 -0.3 599,544 + Dsui_0604 0.54 +0.7 599,598 + Dsui_0604 0.59 -0.9 599,755 - Dsui_0604 0.74 -1.3 599,883 - Dsui_0604 0.87 -1.1 600,074 - +0.5 600,097 - -0.0 600,133 - -0.3 600,175 - Dsui_0605 0.12 +0.1 600,206 - Dsui_0605 0.15 +0.4 600,213 + Dsui_0605 0.15 -0.4 600,418 + Dsui_0605 0.33 +0.1 600,545 - Dsui_0605 0.45 +0.1 600,553 - Dsui_0605 0.45 +0.5 600,695 - Dsui_0605 0.58 -0.1 600,828 + Dsui_0605 0.69 -0.3 600,828 + Dsui_0605 0.69 +0.1 600,828 + Dsui_0605 0.69 +0.3 600,836 - Dsui_0605 0.70 +0.9 600,836 - Dsui_0605 0.70 +0.7 600,836 - Dsui_0605 0.70 +0.1 600,860 - Dsui_0605 0.72 -0.0 600,968 - Dsui_0605 0.82 -0.5 601,245 - +0.2 601,258 - +0.7 601,310 - +0.1 601,314 + -0.1 601,407 - Dsui_0606 0.13 -0.1 601,445 - Dsui_0606 0.16 -0.3 601,560 + Dsui_0606 0.26 -0.9 601,697 + Dsui_0606 0.37 +0.7 601,702 + Dsui_0606 0.38 +0.1 601,882 + -1.1 601,986 + Dsui_0606 0.62 +1.9 602,163 - Dsui_0606 0.77 -1.9
Or see this region's nucleotide sequence