Strain Fitness in Dechlorosoma suillum PS around Dsui_0581

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0580 and Dsui_0581 are separated by 7 nucleotidesDsui_0581 and Dsui_0582 are separated by 74 nucleotides Dsui_0580: Dsui_0580 - ATP-dependent protease HslVU, ATPase subunit, at 577,832 to 579,169 _0580 Dsui_0581: Dsui_0581 - ATP-dependent protease HslVU, peptidase subunit, at 579,177 to 579,713 _0581 Dsui_0582: Dsui_0582 - anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 579,788 to 581,017 _0582 Position (kb) 579 580Strain fitness (log2 ratio) -1 0 1at 578.212 kb on + strand, within Dsui_0580at 578.437 kb on - strand, within Dsui_0580at 578.769 kb on - strand, within Dsui_0580at 578.890 kb on + strand, within Dsui_0580at 578.900 kb on + strand, within Dsui_0580at 579.053 kb on - strandat 579.102 kb on + strandat 579.279 kb on - strand, within Dsui_0581at 579.519 kb on - strand, within Dsui_0581at 579.538 kb on - strand, within Dsui_0581at 579.580 kb on + strand, within Dsui_0581at 579.598 kb on - strand, within Dsui_0581at 579.640 kb on - strand, within Dsui_0581at 579.686 kb on + strandat 579.707 kb on + strandat 580.134 kb on - strand, within Dsui_0582at 580.168 kb on - strand, within Dsui_0582at 580.389 kb on + strandat 580.389 kb on + strandat 580.397 kb on - strand, within Dsui_0582at 580.590 kb on - strand, within Dsui_0582

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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578,212 + Dsui_0580 0.28 -0.2
578,437 - Dsui_0580 0.45 -0.3
578,769 - Dsui_0580 0.70 -0.3
578,890 + Dsui_0580 0.79 -0.5
578,900 + Dsui_0580 0.80 -0.9
579,053 - +0.6
579,102 + +1.5
579,279 - Dsui_0581 0.19 -1.2
579,519 - Dsui_0581 0.64 -0.9
579,538 - Dsui_0581 0.67 +0.5
579,580 + Dsui_0581 0.75 -1.1
579,598 - Dsui_0581 0.78 -0.5
579,640 - Dsui_0581 0.86 -0.6
579,686 + +0.5
579,707 + +0.2
580,134 - Dsui_0582 0.28 -1.0
580,168 - Dsui_0582 0.31 +1.0
580,389 + -0.9
580,389 + +1.1
580,397 - Dsui_0582 0.50 -0.1
580,590 - Dsui_0582 0.65 -0.2

Or see this region's nucleotide sequence