Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0214 and Dsui_0215 are separated by 2 nucleotides Dsui_0215 and Dsui_0216 overlap by 4 nucleotides Dsui_0216 and Dsui_0217 overlap by 4 nucleotides Dsui_0217 and Dsui_0218 overlap by 62 nucleotides Dsui_0218 and Dsui_0219 are separated by 197 nucleotides
Dsui_0214: Dsui_0214 - TIGR02594 family protein, at 214,590 to 215,081
_0214
Dsui_0215: Dsui_0215 - hypothetical protein, at 215,084 to 215,500
_0215
Dsui_0216: Dsui_0216 - hypothetical protein, at 215,497 to 215,766
_0216
Dsui_0217: Dsui_0217 - hypothetical protein, at 215,763 to 215,936
_0217
Dsui_0218: Dsui_0218 - Integrase, at 215,875 to 217,176
_0218
Dsui_0219: Dsui_0219 - anthranilate synthase component I, at 217,374 to 218,849
_0219
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 214.981 kb on - strand, within Dsui_0214 at 215.216 kb on - strand, within Dsui_0215 at 215.226 kb on - strand, within Dsui_0215 at 215.365 kb on - strand at 215.450 kb on + strand, within Dsui_0215 at 215.482 kb on + strand at 215.494 kb on + strand at 215.495 kb on - strand at 215.626 kb on + strand, within Dsui_0216 at 215.685 kb on + strand at 215.729 kb on + strand, within Dsui_0216 at 215.757 kb on - strand at 215.760 kb on + strand at 215.856 kb on + strand, within Dsui_0217 at 215.886 kb on + strand at 215.894 kb on - strand at 215.965 kb on - strand at 215.988 kb on + strand at 216.049 kb on + strand, within Dsui_0218 at 216.057 kb on - strand, within Dsui_0218 at 216.057 kb on - strand, within Dsui_0218 at 216.121 kb on - strand, within Dsui_0218 at 216.130 kb on - strand, within Dsui_0218 at 216.201 kb on - strand, within Dsui_0218 at 216.300 kb on + strand, within Dsui_0218 at 216.352 kb on - strand, within Dsui_0218 at 216.433 kb on - strand, within Dsui_0218 at 216.443 kb on - strand, within Dsui_0218 at 216.443 kb on - strand, within Dsui_0218 at 216.443 kb on - strand, within Dsui_0218 at 216.685 kb on - strand, within Dsui_0218 at 216.699 kb on + strand, within Dsui_0218 at 216.724 kb on - strand, within Dsui_0218 at 216.785 kb on + strand, within Dsui_0218 at 216.840 kb on + strand at 216.853 kb on - strand, within Dsui_0218 at 216.853 kb on - strand, within Dsui_0218 at 216.858 kb on - strand, within Dsui_0218 at 216.927 kb on + strand, within Dsui_0218 at 217.013 kb on - strand, within Dsui_0218 at 217.037 kb on - strand, within Dsui_0218 at 217.083 kb on + strand at 217.105 kb on + strand at 217.106 kb on + strand at 217.164 kb on + strand at 217.182 kb on + strand at 217.190 kb on - strand at 217.204 kb on + strand at 217.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 214,981 - Dsui_0214 0.79 +0.0 215,216 - Dsui_0215 0.32 +1.2 215,226 - Dsui_0215 0.34 -0.1 215,365 - +0.8 215,450 + Dsui_0215 0.88 +1.5 215,482 + -0.3 215,494 + +3.0 215,495 - -0.1 215,626 + Dsui_0216 0.48 -0.3 215,685 + +2.8 215,729 + Dsui_0216 0.86 -0.9 215,757 - -0.3 215,760 + +0.7 215,856 + Dsui_0217 0.53 +0.1 215,886 + +0.2 215,894 - -0.3 215,965 - +0.1 215,988 + -1.8 216,049 + Dsui_0218 0.13 +0.3 216,057 - Dsui_0218 0.14 +0.2 216,057 - Dsui_0218 0.14 -0.2 216,121 - Dsui_0218 0.19 +0.1 216,130 - Dsui_0218 0.20 +0.5 216,201 - Dsui_0218 0.25 +0.1 216,300 + Dsui_0218 0.33 -0.1 216,352 - Dsui_0218 0.37 -0.7 216,433 - Dsui_0218 0.43 +0.6 216,443 - Dsui_0218 0.44 +0.2 216,443 - Dsui_0218 0.44 -0.2 216,443 - Dsui_0218 0.44 +0.2 216,685 - Dsui_0218 0.62 +0.2 216,699 + Dsui_0218 0.63 -0.1 216,724 - Dsui_0218 0.65 -0.1 216,785 + Dsui_0218 0.70 +0.4 216,840 + +0.5 216,853 - Dsui_0218 0.75 +0.3 216,853 - Dsui_0218 0.75 +0.0 216,858 - Dsui_0218 0.75 +0.4 216,927 + Dsui_0218 0.81 +0.5 217,013 - Dsui_0218 0.87 +0.0 217,037 - Dsui_0218 0.89 -0.1 217,083 + -0.3 217,105 + -0.9 217,106 + +0.3 217,164 + -0.0 217,182 + -0.3 217,190 - -0.5 217,204 + +0.1 217,352 + +0.3
Or see this region's nucleotide sequence