Strain Fitness in Dechlorosoma suillum PS around Dsui_0157

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0155 and Dsui_0156 are separated by 171 nucleotidesDsui_0156 and Dsui_0157 are separated by 10 nucleotidesDsui_0157 and Dsui_0158 are separated by 64 nucleotides Dsui_0155: Dsui_0155 - RNA polymerase sigma factor, sigma-70 family, at 161,234 to 161,806 _0155 Dsui_0156: Dsui_0156 - thiosulfate reductase cytochrome B subunit (membrane anchoring protein), at 161,978 to 162,574 _0156 Dsui_0157: Dsui_0157 - sulfite oxidase-like oxidoreductase, at 162,585 to 163,373 _0157 Dsui_0158: Dsui_0158 - pentapeptide MXKDX repeat protein, at 163,438 to 163,677 _0158 Position (kb) 162 163 164Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 161.600 kb on - strand, within Dsui_0155at 161.602 kb on - strand, within Dsui_0155at 161.602 kb on - strand, within Dsui_0155at 161.628 kb on - strand, within Dsui_0155at 161.629 kb on + strand, within Dsui_0155at 161.635 kb on - strand, within Dsui_0155at 161.651 kb on + strand, within Dsui_0155at 161.659 kb on - strand, within Dsui_0155at 161.659 kb on - strand, within Dsui_0155at 161.659 kb on - strand, within Dsui_0155at 161.659 kb on - strand, within Dsui_0155at 161.659 kb on - strand, within Dsui_0155at 161.680 kb on + strand, within Dsui_0155at 161.685 kb on + strand, within Dsui_0155at 161.714 kb on - strand, within Dsui_0155at 161.723 kb on + strand, within Dsui_0155at 161.724 kb on + strand, within Dsui_0155at 161.729 kb on + strand, within Dsui_0155at 161.734 kb on + strand, within Dsui_0155at 161.734 kb on + strand, within Dsui_0155at 161.734 kb on + strand, within Dsui_0155at 161.737 kb on - strand, within Dsui_0155at 161.737 kb on - strand, within Dsui_0155at 161.742 kb on - strand, within Dsui_0155at 161.742 kb on - strand, within Dsui_0155at 161.742 kb on - strand, within Dsui_0155at 161.742 kb on - strand, within Dsui_0155at 161.745 kb on + strand, within Dsui_0155at 161.753 kb on + strandat 161.753 kb on - strandat 161.760 kb on + strandat 161.762 kb on + strandat 161.766 kb on + strandat 161.770 kb on - strandat 161.770 kb on - strandat 161.770 kb on - strandat 161.770 kb on - strandat 161.770 kb on - strandat 161.781 kb on + strandat 161.798 kb on - strandat 161.798 kb on - strandat 161.803 kb on + strandat 161.812 kb on + strandat 161.817 kb on + strandat 161.817 kb on + strandat 161.817 kb on + strandat 161.835 kb on + strandat 161.838 kb on + strandat 161.864 kb on + strandat 161.871 kb on + strandat 161.871 kb on + strandat 161.872 kb on + strandat 161.872 kb on + strandat 161.872 kb on + strandat 161.872 kb on + strandat 161.878 kb on - strandat 161.879 kb on - strandat 161.879 kb on - strandat 161.879 kb on - strandat 161.879 kb on - strandat 161.879 kb on - strandat 161.880 kb on - strandat 161.880 kb on - strandat 161.889 kb on + strandat 161.895 kb on + strandat 161.897 kb on + strandat 161.897 kb on + strandat 161.902 kb on + strandat 161.905 kb on - strandat 161.907 kb on + strandat 161.907 kb on + strandat 161.909 kb on + strandat 161.912 kb on + strandat 161.915 kb on - strandat 161.915 kb on - strandat 161.915 kb on - strandat 161.929 kb on + strandat 161.929 kb on + strandat 161.929 kb on + strandat 161.937 kb on - strandat 161.937 kb on - strandat 161.939 kb on + strandat 161.953 kb on - strandat 161.962 kb on + strandat 161.962 kb on + strandat 161.964 kb on - strandat 161.968 kb on + strandat 161.968 kb on + strandat 161.968 kb on + strandat 161.968 kb on + strandat 161.970 kb on - strandat 161.970 kb on - strandat 161.970 kb on - strandat 161.970 kb on - strandat 161.976 kb on - strandat 161.976 kb on - strandat 161.976 kb on - strandat 161.976 kb on - strandat 161.983 kb on - strandat 161.989 kb on + strandat 161.989 kb on + strandat 161.989 kb on + strandat 161.997 kb on - strandat 161.997 kb on - strandat 162.013 kb on + strandat 162.020 kb on - strandat 162.020 kb on - strandat 162.021 kb on - strandat 162.030 kb on + strandat 162.030 kb on + strandat 162.030 kb on + strandat 162.031 kb on + strandat 162.034 kb on - strandat 162.036 kb on + strandat 162.036 kb on + strandat 162.038 kb on - strand, within Dsui_0156at 162.038 kb on - strand, within Dsui_0156at 162.038 kb on - strand, within Dsui_0156at 162.039 kb on - strand, within Dsui_0156at 162.046 kb on - strand, within Dsui_0156at 162.047 kb on + strand, within Dsui_0156at 162.055 kb on - strand, within Dsui_0156at 162.097 kb on - strand, within Dsui_0156at 162.102 kb on - strand, within Dsui_0156at 162.102 kb on - strand, within Dsui_0156at 162.128 kb on + strand, within Dsui_0156at 162.135 kb on + strand, within Dsui_0156at 162.140 kb on - strand, within Dsui_0156at 162.147 kb on - strand, within Dsui_0156at 162.160 kb on - strand, within Dsui_0156at 162.170 kb on + strand, within Dsui_0156at 162.171 kb on + strand, within Dsui_0156at 162.202 kb on - strand, within Dsui_0156at 162.251 kb on - strand, within Dsui_0156at 162.265 kb on + strand, within Dsui_0156at 162.308 kb on - strand, within Dsui_0156at 162.335 kb on + strand, within Dsui_0156at 162.343 kb on - strand, within Dsui_0156at 162.348 kb on + strand, within Dsui_0156at 162.356 kb on - strand, within Dsui_0156at 162.381 kb on + strand, within Dsui_0156at 162.396 kb on + strand, within Dsui_0156at 162.404 kb on - strand, within Dsui_0156at 162.406 kb on + strand, within Dsui_0156at 162.412 kb on - strand, within Dsui_0156at 162.475 kb on + strand, within Dsui_0156at 162.485 kb on - strand, within Dsui_0156at 162.510 kb on + strand, within Dsui_0156at 162.518 kb on - strandat 162.528 kb on - strandat 162.528 kb on - strandat 162.534 kb on - strandat 162.543 kb on - strandat 162.593 kb on - strandat 162.612 kb on - strandat 162.748 kb on + strand, within Dsui_0157at 162.774 kb on - strand, within Dsui_0157at 162.810 kb on - strand, within Dsui_0157at 162.827 kb on + strand, within Dsui_0157at 162.831 kb on - strand, within Dsui_0157at 162.847 kb on + strand, within Dsui_0157at 162.847 kb on + strand, within Dsui_0157at 162.881 kb on - strand, within Dsui_0157at 162.914 kb on - strand, within Dsui_0157at 162.934 kb on + strand, within Dsui_0157at 162.936 kb on - strand, within Dsui_0157at 162.956 kb on - strand, within Dsui_0157at 162.995 kb on - strand, within Dsui_0157at 163.020 kb on + strand, within Dsui_0157at 163.020 kb on + strand, within Dsui_0157at 163.022 kb on + strand, within Dsui_0157at 163.046 kb on - strand, within Dsui_0157at 163.073 kb on - strand, within Dsui_0157at 163.081 kb on - strand, within Dsui_0157at 163.084 kb on + strand, within Dsui_0157at 163.084 kb on + strand, within Dsui_0157at 163.084 kb on + strand, within Dsui_0157at 163.092 kb on - strand, within Dsui_0157at 163.099 kb on + strand, within Dsui_0157at 163.146 kb on + strand, within Dsui_0157at 163.153 kb on - strand, within Dsui_0157at 163.212 kb on + strand, within Dsui_0157at 163.274 kb on - strand, within Dsui_0157at 163.316 kb on + strandat 163.319 kb on - strandat 163.322 kb on - strandat 163.324 kb on - strandat 163.330 kb on - strandat 163.341 kb on + strandat 163.341 kb on + strandat 163.347 kb on + strandat 163.347 kb on + strandat 163.347 kb on + strandat 163.349 kb on - strandat 163.355 kb on - strandat 163.355 kb on - strandat 163.355 kb on - strandat 163.385 kb on + strandat 163.393 kb on - strandat 163.393 kb on - strandat 163.393 kb on - strandat 163.399 kb on + strandat 163.410 kb on + strandat 163.418 kb on + strandat 163.456 kb on + strandat 163.462 kb on - strand, within Dsui_0158at 163.466 kb on + strand, within Dsui_0158at 163.466 kb on + strand, within Dsui_0158at 163.466 kb on + strand, within Dsui_0158at 163.466 kb on + strand, within Dsui_0158at 163.466 kb on + strand, within Dsui_0158at 163.466 kb on + strand, within Dsui_0158at 163.472 kb on + strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.474 kb on - strand, within Dsui_0158at 163.480 kb on - strand, within Dsui_0158at 163.524 kb on + strand, within Dsui_0158at 163.532 kb on - strand, within Dsui_0158at 163.551 kb on + strand, within Dsui_0158at 163.551 kb on - strand, within Dsui_0158at 163.560 kb on + strand, within Dsui_0158at 163.581 kb on + strand, within Dsui_0158at 163.589 kb on - strand, within Dsui_0158at 163.592 kb on - strand, within Dsui_0158at 163.598 kb on - strand, within Dsui_0158at 163.656 kb on - strandat 163.678 kb on + strandat 163.712 kb on - strandat 163.730 kb on + strandat 163.744 kb on - strandat 163.764 kb on - strandat 163.775 kb on + strandat 163.775 kb on + strandat 163.775 kb on + strandat 163.783 kb on - strandat 163.783 kb on - strandat 163.783 kb on - strandat 163.805 kb on - strandat 163.810 kb on - strandat 163.828 kb on - strandat 163.831 kb on + strandat 163.831 kb on + strandat 163.831 kb on + strandat 163.831 kb on + strandat 163.831 kb on + strandat 163.831 kb on + strandat 163.831 kb on + strandat 163.831 kb on + strandat 163.832 kb on + strandat 163.832 kb on + strandat 163.839 kb on - strandat 163.839 kb on - strandat 163.839 kb on - strandat 163.839 kb on - strandat 163.839 kb on - strandat 163.867 kb on + strandat 163.873 kb on - strandat 163.873 kb on - strandat 163.878 kb on - strandat 163.884 kb on - strandat 163.913 kb on - strandat 163.925 kb on - strandat 163.957 kb on - strandat 163.970 kb on + strandat 163.978 kb on - strandat 163.978 kb on - strandat 163.980 kb on + strandat 164.009 kb on - strandat 164.010 kb on + strandat 164.025 kb on + strandat 164.025 kb on + strandat 164.051 kb on + strandat 164.059 kb on - strandat 164.068 kb on + strandat 164.110 kb on + strandat 164.124 kb on + strandat 164.128 kb on - strandat 164.138 kb on + strandat 164.149 kb on + strandat 164.149 kb on + strandat 164.149 kb on + strandat 164.149 kb on + strandat 164.149 kb on + strandat 164.157 kb on - strandat 164.157 kb on - strandat 164.157 kb on - strandat 164.157 kb on - strandat 164.157 kb on - strandat 164.209 kb on + strandat 164.240 kb on + strandat 164.251 kb on - strandat 164.251 kb on - strandat 164.251 kb on - strandat 164.260 kb on + strandat 164.263 kb on - strandat 164.263 kb on - strandat 164.272 kb on + strandat 164.292 kb on + strandat 164.328 kb on - strandat 164.328 kb on - strandat 164.333 kb on - strandat 164.346 kb on - strandat 164.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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161,600 - Dsui_0155 0.64 -2.4
161,602 - Dsui_0155 0.64 -1.8
161,602 - Dsui_0155 0.64 -2.5
161,628 - Dsui_0155 0.69 -1.8
161,629 + Dsui_0155 0.69 -1.9
161,635 - Dsui_0155 0.70 -1.9
161,651 + Dsui_0155 0.73 -3.1
161,659 - Dsui_0155 0.74 -2.6
161,659 - Dsui_0155 0.74 -2.2
161,659 - Dsui_0155 0.74 -2.1
161,659 - Dsui_0155 0.74 -2.1
161,659 - Dsui_0155 0.74 -1.6
161,680 + Dsui_0155 0.78 -2.4
161,685 + Dsui_0155 0.79 -3.0
161,714 - Dsui_0155 0.84 -1.5
161,723 + Dsui_0155 0.85 -2.4
161,724 + Dsui_0155 0.86 -1.9
161,729 + Dsui_0155 0.86 -3.8
161,734 + Dsui_0155 0.87 -0.7
161,734 + Dsui_0155 0.87 -1.9
161,734 + Dsui_0155 0.87 -3.4
161,737 - Dsui_0155 0.88 -2.4
161,737 - Dsui_0155 0.88 -1.8
161,742 - Dsui_0155 0.89 -2.2
161,742 - Dsui_0155 0.89 -1.7
161,742 - Dsui_0155 0.89 -2.7
161,742 - Dsui_0155 0.89 -2.4
161,745 + Dsui_0155 0.89 -3.5
161,753 + -2.6
161,753 - -1.9
161,760 + -2.4
161,762 + -2.2
161,766 + -2.4
161,770 - -1.8
161,770 - -1.8
161,770 - -2.1
161,770 - -1.7
161,770 - -1.7
161,781 + -2.2
161,798 - -1.8
161,798 - -0.5
161,803 + -3.6
161,812 + -2.4
161,817 + -1.6
161,817 + -1.8
161,817 + -1.8
161,835 + -1.5
161,838 + -1.3
161,864 + -2.3
161,871 + -2.3
161,871 + -3.1
161,872 + -1.3
161,872 + -1.2
161,872 + -1.7
161,872 + -2.1
161,878 - -1.0
161,879 - -1.2
161,879 - -2.5
161,879 - -1.2
161,879 - -1.4
161,879 - -1.0
161,880 - -1.2
161,880 - -1.3
161,889 + -1.2
161,895 + -1.4
161,897 + -1.6
161,897 + -1.2
161,902 + -0.8
161,905 - -0.5
161,907 + -1.8
161,907 + -1.0
161,909 + -1.0
161,912 + -0.9
161,915 - -1.0
161,915 - -1.1
161,915 - -1.1
161,929 + -0.9
161,929 + -1.1
161,929 + -1.2
161,937 - -0.9
161,937 - -0.6
161,939 + -0.6
161,953 - -1.4
161,962 + -1.6
161,962 + -1.1
161,964 - -0.8
161,968 + -0.5
161,968 + -0.6
161,968 + -1.6
161,968 + -0.6
161,970 - -0.8
161,970 - -0.6
161,970 - -1.0
161,970 - -0.1
161,976 - -0.6
161,976 - -0.9
161,976 - -1.4
161,976 - -2.0
161,983 - -0.8
161,989 + -1.5
161,989 + -1.1
161,989 + -1.5
161,997 - -1.2
161,997 - -0.3
162,013 + -2.8
162,020 - -1.3
162,020 - -1.5
162,021 - -1.1
162,030 + -1.9
162,030 + -1.9
162,030 + +0.3
162,031 + -1.6
162,034 - -1.2
162,036 + -0.7
162,036 + -0.5
162,038 - Dsui_0156 0.10 -1.1
162,038 - Dsui_0156 0.10 -1.4
162,038 - Dsui_0156 0.10 -2.0
162,039 - Dsui_0156 0.10 -1.0
162,046 - Dsui_0156 0.11 -1.3
162,047 + Dsui_0156 0.12 -1.8
162,055 - Dsui_0156 0.13 -1.8
162,097 - Dsui_0156 0.20 -1.3
162,102 - Dsui_0156 0.21 -1.2
162,102 - Dsui_0156 0.21 -1.0
162,128 + Dsui_0156 0.25 -1.2
162,135 + Dsui_0156 0.26 -1.1
162,140 - Dsui_0156 0.27 -1.5
162,147 - Dsui_0156 0.28 -0.8
162,160 - Dsui_0156 0.30 -1.4
162,170 + Dsui_0156 0.32 +0.9
162,171 + Dsui_0156 0.32 -1.4
162,202 - Dsui_0156 0.38 -1.5
162,251 - Dsui_0156 0.46 -1.1
162,265 + Dsui_0156 0.48 -1.4
162,308 - Dsui_0156 0.55 -0.8
162,335 + Dsui_0156 0.60 -1.1
162,343 - Dsui_0156 0.61 -1.3
162,348 + Dsui_0156 0.62 -0.8
162,356 - Dsui_0156 0.63 +0.1
162,381 + Dsui_0156 0.68 -0.5
162,396 + Dsui_0156 0.70 -1.4
162,404 - Dsui_0156 0.71 -1.4
162,406 + Dsui_0156 0.72 -0.6
162,412 - Dsui_0156 0.73 -0.8
162,475 + Dsui_0156 0.83 -0.7
162,485 - Dsui_0156 0.85 -0.3
162,510 + Dsui_0156 0.89 -0.6
162,518 - -1.4
162,528 - -0.4
162,528 - -1.0
162,534 - -1.2
162,543 - -1.1
162,593 - -1.1
162,612 - -1.9
162,748 + Dsui_0157 0.21 -1.1
162,774 - Dsui_0157 0.24 -1.0
162,810 - Dsui_0157 0.29 -1.3
162,827 + Dsui_0157 0.31 -0.9
162,831 - Dsui_0157 0.31 -1.2
162,847 + Dsui_0157 0.33 -0.7
162,847 + Dsui_0157 0.33 -1.2
162,881 - Dsui_0157 0.38 -1.1
162,914 - Dsui_0157 0.42 -0.5
162,934 + Dsui_0157 0.44 -1.5
162,936 - Dsui_0157 0.44 -1.5
162,956 - Dsui_0157 0.47 -1.1
162,995 - Dsui_0157 0.52 -0.8
163,020 + Dsui_0157 0.55 -0.3
163,020 + Dsui_0157 0.55 -0.8
163,022 + Dsui_0157 0.55 -0.2
163,046 - Dsui_0157 0.58 -1.4
163,073 - Dsui_0157 0.62 -0.9
163,081 - Dsui_0157 0.63 -0.9
163,084 + Dsui_0157 0.63 +0.1
163,084 + Dsui_0157 0.63 -0.4
163,084 + Dsui_0157 0.63 -0.7
163,092 - Dsui_0157 0.64 -1.2
163,099 + Dsui_0157 0.65 -0.9
163,146 + Dsui_0157 0.71 -1.7
163,153 - Dsui_0157 0.72 -0.8
163,212 + Dsui_0157 0.79 -0.5
163,274 - Dsui_0157 0.87 -1.0
163,316 + -1.2
163,319 - -1.6
163,322 - -2.0
163,324 - -1.4
163,330 - -0.4
163,341 + -1.4
163,341 + -0.2
163,347 + -1.7
163,347 + -0.8
163,347 + -2.0
163,349 - -0.9
163,355 - -1.1
163,355 - -0.9
163,355 - -1.0
163,385 + -0.7
163,393 - -1.5
163,393 - -1.1
163,393 - -1.4
163,399 + -1.2
163,410 + -2.0
163,418 + -0.3
163,456 + -1.8
163,462 - Dsui_0158 0.10 -1.1
163,466 + Dsui_0158 0.12 -1.2
163,466 + Dsui_0158 0.12 -1.2
163,466 + Dsui_0158 0.12 -1.4
163,466 + Dsui_0158 0.12 -1.0
163,466 + Dsui_0158 0.12 -0.6
163,466 + Dsui_0158 0.12 -1.1
163,472 + Dsui_0158 0.14 -1.5
163,474 - Dsui_0158 0.15 -1.3
163,474 - Dsui_0158 0.15 -0.7
163,474 - Dsui_0158 0.15 -1.1
163,474 - Dsui_0158 0.15 -1.3
163,474 - Dsui_0158 0.15 -0.6
163,474 - Dsui_0158 0.15 -0.9
163,474 - Dsui_0158 0.15 -0.6
163,474 - Dsui_0158 0.15 -1.9
163,474 - Dsui_0158 0.15 -1.4
163,474 - Dsui_0158 0.15 +0.3
163,480 - Dsui_0158 0.17 -1.9
163,524 + Dsui_0158 0.36 -0.6
163,532 - Dsui_0158 0.39 -2.2
163,551 + Dsui_0158 0.47 -1.2
163,551 - Dsui_0158 0.47 -1.2
163,560 + Dsui_0158 0.51 -0.2
163,581 + Dsui_0158 0.60 -1.1
163,589 - Dsui_0158 0.63 -1.3
163,592 - Dsui_0158 0.64 -0.3
163,598 - Dsui_0158 0.67 -0.6
163,656 - -1.0
163,678 + -0.7
163,712 - -2.0
163,730 + +0.2
163,744 - -0.1
163,764 - +0.0
163,775 + +0.1
163,775 + -0.5
163,775 + +0.7
163,783 - +0.1
163,783 - +0.1
163,783 - +0.5
163,805 - +0.1
163,810 - +0.5
163,828 - +0.1
163,831 + +0.0
163,831 + -0.6
163,831 + -0.1
163,831 + +0.0
163,831 + -0.1
163,831 + +0.0
163,831 + -0.1
163,831 + -0.2
163,832 + +0.2
163,832 + -1.0
163,839 - -0.2
163,839 - -0.1
163,839 - -0.3
163,839 - -0.3
163,839 - -0.3
163,867 + -0.2
163,873 - -0.1
163,873 - +0.0
163,878 - +0.1
163,884 - +1.0
163,913 - -0.3
163,925 - -0.2
163,957 - +0.2
163,970 + -0.0
163,978 - +0.3
163,978 - +0.1
163,980 + +0.0
164,009 - -1.1
164,010 + -0.0
164,025 + -0.3
164,025 + -0.2
164,051 + +0.0
164,059 - +0.3
164,068 + -0.1
164,110 + -0.1
164,124 + +0.2
164,128 - -0.2
164,138 + -0.3
164,149 + -0.6
164,149 + +0.0
164,149 + -0.0
164,149 + -0.3
164,149 + -0.1
164,157 - +0.2
164,157 - +0.1
164,157 - +0.1
164,157 - -1.9
164,157 - +0.2
164,209 + +0.7
164,240 + -0.6
164,251 - -0.5
164,251 - -0.2
164,251 - -0.0
164,260 + +0.4
164,263 - -0.5
164,263 - +0.3
164,272 + -0.6
164,292 + +0.5
164,328 - -0.0
164,328 - -0.3
164,333 - -0.1
164,346 - -0.7
164,360 - -0.1

Or see this region's nucleotide sequence