Strain Fitness in Shewanella oneidensis MR-1 around SO3345

Experiment: benzoic 0.29 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	benzoic 0.29 mg/ml
3,490,380	+		SO3343	0.39	+0.5
3,490,615	+		SO3343	0.81	+0.6
3,490,615	+		SO3343	0.81	+0.2
3,490,623	-		SO3343	0.82	+0.1
3,490,623	-		SO3343	0.82	+0.6
3,490,623	-		SO3343	0.82	+0.1
3,490,650	+		SO3343	0.87	-0.8
3,490,689	-				+0.8
3,490,689	-				-0.4
3,490,689	-				-0.0
3,490,689	-				+0.5
3,490,695	+				-4.4
3,490,703	-				-0.0
3,490,739	+				-0.3
3,490,783	+				-0.4
3,490,785	+				+0.1
3,490,791	-				+1.3
3,490,826	+				+0.5
3,490,912	-				+1.2
3,490,943	+		SO3344	0.13	+0.0
3,490,943	+		SO3344	0.13	+0.1
3,490,943	+		SO3344	0.13	+0.8
3,490,951	-		SO3344	0.16	+0.5
3,490,956	-		SO3344	0.17	+0.7
3,490,964	+		SO3344	0.20	+0.0
3,490,993	-		SO3344	0.29	+0.1
3,491,008	-		SO3344	0.34	-0.3
3,491,022	-		SO3344	0.38	-1.3
3,491,062	-		SO3344	0.51	+0.7
3,491,072	-		SO3344	0.54	+0.4
3,491,072	-		SO3344	0.54	-0.1
3,491,081	+		SO3344	0.57	-1.3
3,491,089	-		SO3344	0.59	+0.5
3,491,164	+		SO3344	0.83	-1.1
3,491,164	+		SO3344	0.83	+0.3
3,491,164	+		SO3344	0.83	-1.0
3,491,164	+		SO3344	0.83	+0.5
3,491,171	+		SO3344	0.85	+0.0
3,491,172	-		SO3344	0.86	+0.2
3,491,177	-		SO3344	0.87	+0.7
3,491,241	-				-0.0
3,491,307	+				-0.1
3,491,331	+				-0.3
3,491,352	+				+0.4
3,491,394	+				+0.1
3,491,402	-		SO3345	0.11	-0.9
3,491,404	-		SO3345	0.11	-0.7
3,491,406	+		SO3345	0.12	+0.5
3,491,406	+		SO3345	0.12	-0.7
3,491,406	+		SO3345	0.12	+0.3
3,491,414	-		SO3345	0.14	+0.2
3,491,414	-		SO3345	0.14	+1.1
3,491,417	+		SO3345	0.15	+0.1
3,491,437	-		SO3345	0.21	-0.1
3,491,479	-		SO3345	0.34	+0.4
3,492,141	+		SO3346	0.19	-1.2
3,492,158	+		SO3346	0.22	-1.1
3,492,158	+		SO3346	0.22	-0.1