Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0853 and SO0854 are separated by 1 nucleotides SO0854 and SO0855 are separated by 226 nucleotides SO0855 and SO0856 overlap by 4 nucleotides
SO0853: SO0853 - pilin, putative (NCBI ptt file), at 874,887 to 875,321
SO0853
SO0854: SO0854 - type IV pilin, putative (NCBI ptt file), at 875,323 to 875,694
SO0854
SO0855: SO0855 - conserved hypothetical protein (NCBI ptt file), at 875,921 to 877,198
SO0855
SO0856: SO0856 - conserved hypothetical protein (NCBI ptt file), at 877,195 to 879,888
SO0856
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -1
0
1 at 875.017 kb on + strand, within SO0853 at 875.018 kb on + strand, within SO0853 at 875.115 kb on - strand, within SO0853 at 875.132 kb on + strand, within SO0853 at 875.237 kb on + strand, within SO0853 at 875.237 kb on + strand, within SO0853 at 875.237 kb on + strand, within SO0853 at 875.245 kb on - strand, within SO0853 at 875.373 kb on + strand, within SO0854 at 875.374 kb on + strand, within SO0854 at 875.425 kb on - strand, within SO0854 at 875.459 kb on - strand, within SO0854 at 875.475 kb on - strand, within SO0854 at 875.488 kb on + strand, within SO0854 at 875.648 kb on + strand, within SO0854 at 875.667 kb on + strand at 875.675 kb on - strand at 875.708 kb on - strand at 875.720 kb on + strand at 875.861 kb on + strand at 875.869 kb on - strand at 875.869 kb on - strand at 875.948 kb on - strand at 875.999 kb on + strand at 876.015 kb on - strand at 876.155 kb on - strand, within SO0855 at 876.200 kb on + strand, within SO0855 at 876.200 kb on + strand, within SO0855 at 876.208 kb on - strand, within SO0855 at 876.239 kb on - strand, within SO0855 at 876.294 kb on - strand at 876.332 kb on + strand, within SO0855 at 876.342 kb on + strand, within SO0855 at 876.353 kb on + strand, within SO0855 at 876.353 kb on + strand, within SO0855 at 876.464 kb on + strand, within SO0855 at 876.543 kb on - strand, within SO0855 at 876.560 kb on + strand, within SO0855 at 876.670 kb on - strand, within SO0855 at 876.761 kb on + strand, within SO0855 at 876.864 kb on - strand, within SO0855 at 876.938 kb on - strand, within SO0855 at 876.948 kb on + strand, within SO0855 at 876.948 kb on + strand, within SO0855 at 877.127 kb on + strand at 877.162 kb on - strand at 877.193 kb on + strand at 877.201 kb on - strand at 877.210 kb on - strand at 877.270 kb on + strand at 877.298 kb on + strand at 877.316 kb on - strand at 877.389 kb on - strand at 877.535 kb on - strand, within SO0856 at 877.535 kb on - strand, within SO0856 at 877.548 kb on + strand, within SO0856 at 877.579 kb on + strand, within SO0856 at 877.584 kb on + strand, within SO0856 at 877.592 kb on - strand, within SO0856 at 877.680 kb on - strand, within SO0856 at 877.685 kb on - strand, within SO0856 at 877.724 kb on + strand, within SO0856 at 877.799 kb on - strand, within SO0856 at 877.824 kb on - strand, within SO0856 at 877.941 kb on + strand, within SO0856 at 877.949 kb on - strand, within SO0856 at 878.042 kb on + strand, within SO0856 at 878.058 kb on - strand, within SO0856 at 878.121 kb on - strand, within SO0856 at 878.129 kb on - strand, within SO0856
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 875,017 + SO0853 0.30 +0.2 875,018 + SO0853 0.30 +0.2 875,115 - SO0853 0.52 +0.4 875,132 + SO0853 0.56 -1.0 875,237 + SO0853 0.80 +0.0 875,237 + SO0853 0.80 -0.5 875,237 + SO0853 0.80 +0.6 875,245 - SO0853 0.82 -0.7 875,373 + SO0854 0.13 +0.2 875,374 + SO0854 0.14 +0.0 875,425 - SO0854 0.27 -0.3 875,459 - SO0854 0.37 -0.1 875,475 - SO0854 0.41 +0.2 875,488 + SO0854 0.44 +0.6 875,648 + SO0854 0.87 +0.1 875,667 + +0.2 875,675 - +0.1 875,708 - -0.0 875,720 + -0.2 875,861 + -0.6 875,869 - +0.1 875,869 - +0.2 875,948 - +0.4 875,999 + -0.1 876,015 - -0.3 876,155 - SO0855 0.18 -0.1 876,200 + SO0855 0.22 +0.1 876,200 + SO0855 0.22 -0.1 876,208 - SO0855 0.22 -0.7 876,239 - SO0855 0.25 +1.5 876,294 - +0.2 876,332 + SO0855 0.32 +0.3 876,342 + SO0855 0.33 +0.2 876,353 + SO0855 0.34 +0.4 876,353 + SO0855 0.34 -0.3 876,464 + SO0855 0.42 -0.6 876,543 - SO0855 0.49 +0.5 876,560 + SO0855 0.50 +0.2 876,670 - SO0855 0.59 +0.3 876,761 + SO0855 0.66 +0.5 876,864 - SO0855 0.74 +0.2 876,938 - SO0855 0.80 -0.0 876,948 + SO0855 0.80 -1.3 876,948 + SO0855 0.80 +0.5 877,127 + +0.6 877,162 - -0.4 877,193 + -0.6 877,201 - -0.3 877,210 - +1.3 877,270 + +0.0 877,298 + +0.5 877,316 - +0.4 877,389 - -0.3 877,535 - SO0856 0.13 +0.0 877,535 - SO0856 0.13 -0.0 877,548 + SO0856 0.13 +0.4 877,579 + SO0856 0.14 +0.6 877,584 + SO0856 0.14 -1.6 877,592 - SO0856 0.15 +0.5 877,680 - SO0856 0.18 +0.1 877,685 - SO0856 0.18 -0.3 877,724 + SO0856 0.20 +0.6 877,799 - SO0856 0.22 -0.5 877,824 - SO0856 0.23 +0.4 877,941 + SO0856 0.28 +0.5 877,949 - SO0856 0.28 +0.6 878,042 + SO0856 0.31 +0.4 878,058 - SO0856 0.32 +0.1 878,121 - SO0856 0.34 +0.3 878,129 - SO0856 0.35 -0.2
Or see this region's nucleotide sequence