Strain Fitness in Dechlorosoma suillum PS around Dsui_3529

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3527 and Dsui_3528 are separated by 29 nucleotidesDsui_3528 and Dsui_3529 are separated by 17 nucleotidesDsui_3529 and Dsui_3530 are separated by 198 nucleotidesDsui_3530 and Dsui_3531 overlap by 4 nucleotides Dsui_3527: Dsui_3527 - ketol-acid reductoisomerase, at 3,793,562 to 3,794,578 _3527 Dsui_3528: Dsui_3528 - acetolactate synthase, small subunit, at 3,794,608 to 3,795,099 _3528 Dsui_3529: Dsui_3529 - acetolactate synthase, large subunit, biosynthetic type, at 3,795,117 to 3,796,817 _3529 Dsui_3530: Dsui_3530 - DNA-directed RNA polymerase specialized sigma subunit, sigma24, at 3,797,016 to 3,797,573 _3530 Dsui_3531: Dsui_3531 - Protein of unknown function (DUF3619), at 3,797,570 to 3,797,941 _3531 Position (kb) 3795 3796 3797Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 3794.245 kb on - strand, within Dsui_3527at 3794.830 kb on - strand, within Dsui_3528at 3795.109 kb on - strandat 3796.878 kb on + strandat 3796.893 kb on - strandat 3796.904 kb on - strandat 3796.907 kb on + strandat 3796.907 kb on + strandat 3796.931 kb on + strandat 3796.951 kb on - strandat 3796.951 kb on - strandat 3796.952 kb on - strandat 3797.002 kb on + strandat 3797.076 kb on - strand, within Dsui_3530at 3797.078 kb on + strand, within Dsui_3530at 3797.109 kb on + strand, within Dsui_3530at 3797.117 kb on - strand, within Dsui_3530at 3797.118 kb on - strand, within Dsui_3530at 3797.138 kb on - strand, within Dsui_3530at 3797.197 kb on - strand, within Dsui_3530at 3797.314 kb on + strand, within Dsui_3530at 3797.322 kb on - strand, within Dsui_3530at 3797.322 kb on - strand, within Dsui_3530at 3797.322 kb on - strandat 3797.356 kb on + strand, within Dsui_3530at 3797.356 kb on + strand, within Dsui_3530at 3797.364 kb on - strandat 3797.374 kb on - strand, within Dsui_3530at 3797.380 kb on - strandat 3797.421 kb on - strandat 3797.438 kb on - strand, within Dsui_3530at 3797.527 kb on + strandat 3797.527 kb on + strandat 3797.527 kb on + strandat 3797.527 kb on + strandat 3797.560 kb on + strandat 3797.567 kb on - strandat 3797.761 kb on + strand, within Dsui_3531at 3797.775 kb on + strand, within Dsui_3531at 3797.779 kb on + strand, within Dsui_3531at 3797.787 kb on - strand, within Dsui_3531

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,794,245 - Dsui_3527 0.67 -6.0
3,794,830 - Dsui_3528 0.45 +2.3
3,795,109 - -0.2
3,796,878 + -0.3
3,796,893 - -0.1
3,796,904 - +0.0
3,796,907 + +0.1
3,796,907 + +0.2
3,796,931 + +0.3
3,796,951 - -1.1
3,796,951 - -2.1
3,796,952 - -0.1
3,797,002 + +0.6
3,797,076 - Dsui_3530 0.11 -1.0
3,797,078 + Dsui_3530 0.11 -0.5
3,797,109 + Dsui_3530 0.17 +0.4
3,797,117 - Dsui_3530 0.18 -1.3
3,797,118 - Dsui_3530 0.18 -0.5
3,797,138 - Dsui_3530 0.22 -0.1
3,797,197 - Dsui_3530 0.32 -0.8
3,797,314 + Dsui_3530 0.53 -0.5
3,797,322 - Dsui_3530 0.55 -0.6
3,797,322 - Dsui_3530 0.55 +0.5
3,797,322 - +1.3
3,797,356 + Dsui_3530 0.61 -0.9
3,797,356 + Dsui_3530 0.61 +0.1
3,797,364 - +0.7
3,797,374 - Dsui_3530 0.64 -0.7
3,797,380 - +1.9
3,797,421 - -0.3
3,797,438 - Dsui_3530 0.76 +0.6
3,797,527 + -0.3
3,797,527 + -2.0
3,797,527 + -2.0
3,797,527 + +0.2
3,797,560 + -0.0
3,797,567 - -1.0
3,797,761 + Dsui_3531 0.51 +0.3
3,797,775 + Dsui_3531 0.55 +0.7
3,797,779 + Dsui_3531 0.56 -0.5
3,797,787 - Dsui_3531 0.58 -0.5

Or see this region's nucleotide sequence