Strain Fitness in Dechlorosoma suillum PS around Dsui_3524

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3522 and Dsui_3523 are separated by 77 nucleotidesDsui_3523 and Dsui_3524 overlap by 17 nucleotidesDsui_3524 and Dsui_3525 are separated by 1 nucleotidesDsui_3525 and Dsui_3526 are separated by 12 nucleotides Dsui_3522: Dsui_3522 - outer membrane protein, at 3,788,584 to 3,789,840 _3522 Dsui_3523: Dsui_3523 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,789,918 to 3,790,628 _3523 Dsui_3524: Dsui_3524 - signal transduction histidine kinase, at 3,790,612 to 3,792,000 _3524 Dsui_3525: Dsui_3525 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,792,002 to 3,792,766 _3525 Dsui_3526: Dsui_3526 - phosphatidylserine decarboxylase, at 3,792,779 to 3,793,423 _3526 Position (kb) 3790 3791 3792 3793Strain fitness (log2 ratio) -3 -2 -1 0 1at 3789.694 kb on + strand, within Dsui_3522at 3789.743 kb on + strandat 3789.745 kb on - strandat 3789.745 kb on - strandat 3789.747 kb on + strandat 3789.751 kb on - strandat 3789.753 kb on + strandat 3789.818 kb on - strandat 3789.820 kb on + strandat 3789.914 kb on - strandat 3789.973 kb on - strandat 3790.048 kb on + strand, within Dsui_3523at 3790.071 kb on - strand, within Dsui_3523at 3790.071 kb on - strand, within Dsui_3523at 3790.120 kb on + strand, within Dsui_3523at 3790.138 kb on - strand, within Dsui_3523at 3790.163 kb on - strandat 3790.165 kb on + strand, within Dsui_3523at 3790.198 kb on - strand, within Dsui_3523at 3790.357 kb on + strand, within Dsui_3523at 3790.426 kb on + strand, within Dsui_3523at 3790.443 kb on - strand, within Dsui_3523at 3790.482 kb on - strandat 3790.483 kb on - strand, within Dsui_3523at 3790.518 kb on - strand, within Dsui_3523at 3790.602 kb on - strandat 3790.622 kb on + strandat 3790.635 kb on - strandat 3790.671 kb on + strandat 3790.757 kb on - strandat 3790.760 kb on + strand, within Dsui_3524at 3790.768 kb on - strand, within Dsui_3524at 3790.772 kb on - strand, within Dsui_3524at 3791.137 kb on - strand, within Dsui_3524at 3791.231 kb on + strand, within Dsui_3524at 3791.239 kb on - strand, within Dsui_3524at 3791.386 kb on + strand, within Dsui_3524at 3791.506 kb on + strand, within Dsui_3524at 3791.506 kb on + strand, within Dsui_3524at 3791.511 kb on + strand, within Dsui_3524at 3791.511 kb on + strand, within Dsui_3524at 3791.514 kb on - strand, within Dsui_3524at 3791.740 kb on - strand, within Dsui_3524at 3791.878 kb on - strandat 3791.884 kb on - strandat 3791.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,789,694 + Dsui_3522 0.88 +0.1
3,789,743 + -0.3
3,789,745 - -1.1
3,789,745 - +0.6
3,789,747 + -1.0
3,789,751 - -0.5
3,789,753 + +0.3
3,789,818 - -0.5
3,789,820 + -1.7
3,789,914 - -0.4
3,789,973 - -1.3
3,790,048 + Dsui_3523 0.18 -0.7
3,790,071 - Dsui_3523 0.22 +0.5
3,790,071 - Dsui_3523 0.22 +0.0
3,790,120 + Dsui_3523 0.28 -1.0
3,790,138 - Dsui_3523 0.31 -1.9
3,790,163 - +0.3
3,790,165 + Dsui_3523 0.35 +0.5
3,790,198 - Dsui_3523 0.39 -0.3
3,790,357 + Dsui_3523 0.62 -0.1
3,790,426 + Dsui_3523 0.71 -0.1
3,790,443 - Dsui_3523 0.74 -2.0
3,790,482 - -0.3
3,790,483 - Dsui_3523 0.79 -0.7
3,790,518 - Dsui_3523 0.84 -2.3
3,790,602 - +0.3
3,790,622 + +1.6
3,790,635 - -0.1
3,790,671 + -0.6
3,790,757 - +1.3
3,790,760 + Dsui_3524 0.11 -0.7
3,790,768 - Dsui_3524 0.11 -0.5
3,790,772 - Dsui_3524 0.12 -0.3
3,791,137 - Dsui_3524 0.38 -1.2
3,791,231 + Dsui_3524 0.45 +0.1
3,791,239 - Dsui_3524 0.45 -1.3
3,791,386 + Dsui_3524 0.56 -3.4
3,791,506 + Dsui_3524 0.64 -0.1
3,791,506 + Dsui_3524 0.64 -2.0
3,791,511 + Dsui_3524 0.65 -1.7
3,791,511 + Dsui_3524 0.65 -1.2
3,791,514 - Dsui_3524 0.65 -1.0
3,791,740 - Dsui_3524 0.81 -0.7
3,791,878 - +0.7
3,791,884 - -0.4
3,791,892 + +0.5

Or see this region's nucleotide sequence