Strain Fitness in Dechlorosoma suillum PS around Dsui_3214

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3212 and Dsui_3213 are separated by 330 nucleotidesDsui_3213 and Dsui_3214 are separated by 125 nucleotidesDsui_3214 and Dsui_3215 overlap by 8 nucleotides Dsui_3212: Dsui_3212 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,446,689 to 3,448,356 _3212 Dsui_3213: Dsui_3213 - CBS domain-containing protein, at 3,448,687 to 3,449,136 _3213 Dsui_3214: Dsui_3214 - ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing, at 3,449,262 to 3,452,603 _3214 Dsui_3215: Dsui_3215 - Inactivated superfamily I helicase, at 3,452,596 to 3,455,388 _3215 Position (kb) 3449 3450 3451 3452 3453Strain fitness (log2 ratio) -1 0 1 2at 3448.264 kb on - strandat 3448.366 kb on - strandat 3448.421 kb on - strandat 3448.472 kb on + strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.603 kb on - strandat 3448.690 kb on + strandat 3448.809 kb on - strand, within Dsui_3213at 3448.900 kb on - strand, within Dsui_3213at 3449.065 kb on + strandat 3449.065 kb on + strandat 3449.087 kb on + strandat 3449.095 kb on - strandat 3449.095 kb on - strandat 3449.095 kb on - strandat 3449.095 kb on - strandat 3449.183 kb on - strandat 3451.097 kb on - strandat 3451.395 kb on - strand, within Dsui_3214

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,448,264 - +0.4
3,448,366 - +0.5
3,448,421 - +0.2
3,448,472 + -0.2
3,448,480 - -0.1
3,448,480 - +1.2
3,448,480 - +1.8
3,448,480 - +0.0
3,448,480 - +1.3
3,448,603 - -0.4
3,448,690 + -0.1
3,448,809 - Dsui_3213 0.27 +1.1
3,448,900 - Dsui_3213 0.47 +1.0
3,449,065 + +1.3
3,449,065 + +2.0
3,449,087 + +1.3
3,449,095 - +1.1
3,449,095 - +1.5
3,449,095 - +1.3
3,449,095 - +1.4
3,449,183 - +0.4
3,451,097 - +1.3
3,451,395 - Dsui_3214 0.64 -1.3

Or see this region's nucleotide sequence