Strain Fitness in Dechlorosoma suillum PS around Dsui_3087

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3086 and Dsui_3087 overlap by 1 nucleotidesDsui_3087 and Dsui_3088 are separated by 110 nucleotidesDsui_3088 and Dsui_3089 are separated by 48 nucleotides Dsui_3086: Dsui_3086 - hypothetical protein, at 3,304,920 to 3,306,221 _3086 Dsui_3087: Dsui_3087 - peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 3,306,221 to 3,306,796 _3087 Dsui_3088: Dsui_3088 - peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 3,306,907 to 3,307,398 _3088 Dsui_3089: Dsui_3089 - UDP-2,3-diacylglucosamine hydrolase, at 3,307,447 to 3,308,205 _3089 Position (kb) 3306 3307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3305.240 kb on + strand, within Dsui_3086at 3305.240 kb on + strand, within Dsui_3086at 3305.307 kb on + strand, within Dsui_3086at 3305.372 kb on + strand, within Dsui_3086at 3305.418 kb on + strand, within Dsui_3086at 3305.439 kb on - strandat 3305.446 kb on - strand, within Dsui_3086at 3305.480 kb on + strand, within Dsui_3086at 3305.494 kb on - strand, within Dsui_3086at 3305.518 kb on + strand, within Dsui_3086at 3305.526 kb on - strand, within Dsui_3086at 3305.536 kb on - strand, within Dsui_3086at 3305.536 kb on - strand, within Dsui_3086at 3305.559 kb on + strand, within Dsui_3086at 3305.596 kb on + strand, within Dsui_3086at 3305.633 kb on - strand, within Dsui_3086at 3305.945 kb on - strandat 3305.945 kb on - strand, within Dsui_3086at 3306.038 kb on + strand, within Dsui_3086at 3306.112 kb on + strandat 3306.112 kb on + strandat 3306.120 kb on - strandat 3306.349 kb on + strand, within Dsui_3087at 3306.368 kb on + strand, within Dsui_3087at 3306.556 kb on - strand, within Dsui_3087at 3306.556 kb on - strand, within Dsui_3087at 3306.557 kb on - strand, within Dsui_3087at 3306.630 kb on - strandat 3306.646 kb on + strand, within Dsui_3087at 3306.646 kb on + strand, within Dsui_3087at 3306.650 kb on - strand, within Dsui_3087at 3306.654 kb on - strandat 3306.654 kb on - strand, within Dsui_3087at 3306.654 kb on - strand, within Dsui_3087at 3306.768 kb on + strandat 3306.946 kb on + strandat 3307.192 kb on + strand, within Dsui_3088at 3307.192 kb on + strand, within Dsui_3088at 3307.311 kb on + strand, within Dsui_3088at 3307.311 kb on + strand, within Dsui_3088at 3307.340 kb on + strand, within Dsui_3088

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,305,240 + Dsui_3086 0.25 +0.1
3,305,240 + Dsui_3086 0.25 -0.3
3,305,307 + Dsui_3086 0.30 -0.0
3,305,372 + Dsui_3086 0.35 +1.0
3,305,418 + Dsui_3086 0.38 -0.3
3,305,439 - -0.0
3,305,446 - Dsui_3086 0.40 -1.0
3,305,480 + Dsui_3086 0.43 +0.3
3,305,494 - Dsui_3086 0.44 -0.1
3,305,518 + Dsui_3086 0.46 +0.9
3,305,526 - Dsui_3086 0.47 -0.3
3,305,536 - Dsui_3086 0.47 +1.0
3,305,536 - Dsui_3086 0.47 -0.8
3,305,559 + Dsui_3086 0.49 +0.0
3,305,596 + Dsui_3086 0.52 +0.2
3,305,633 - Dsui_3086 0.55 -1.4
3,305,945 - +0.3
3,305,945 - Dsui_3086 0.79 -0.9
3,306,038 + Dsui_3086 0.86 +0.2
3,306,112 + +0.2
3,306,112 + -0.2
3,306,120 - +0.9
3,306,349 + Dsui_3087 0.22 +0.5
3,306,368 + Dsui_3087 0.26 +0.6
3,306,556 - Dsui_3087 0.58 -0.6
3,306,556 - Dsui_3087 0.58 +0.1
3,306,557 - Dsui_3087 0.58 -1.4
3,306,630 - +1.9
3,306,646 + Dsui_3087 0.74 -4.2
3,306,646 + Dsui_3087 0.74 +0.5
3,306,650 - Dsui_3087 0.74 +1.5
3,306,654 - +1.9
3,306,654 - Dsui_3087 0.75 +0.2
3,306,654 - Dsui_3087 0.75 -0.6
3,306,768 + +0.9
3,306,946 + -0.5
3,307,192 + Dsui_3088 0.58 -3.0
3,307,192 + Dsui_3088 0.58 -3.2
3,307,311 + Dsui_3088 0.82 -0.4
3,307,311 + Dsui_3088 0.82 +0.4
3,307,340 + Dsui_3088 0.88 -1.5

Or see this region's nucleotide sequence