Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3059 and Dsui_3060 are separated by 91 nucleotides Dsui_3060 and Dsui_3061 are separated by 35 nucleotides Dsui_3061 and Dsui_3062 are separated by 16 nucleotides Dsui_3062 and Dsui_3063 are separated by 96 nucleotides
Dsui_3059: Dsui_3059 - ATP-dependent metalloprotease FtsH, at 3,274,063 to 3,275,946
_3059
Dsui_3060: Dsui_3060 - 23S rRNA methylase, at 3,276,038 to 3,276,670
_3060
Dsui_3061: Dsui_3061 - putative RNA-binding protein, YhbY family, at 3,276,706 to 3,277,062
_3061
Dsui_3062: Dsui_3062 - hypothetical protein, at 3,277,079 to 3,277,570
_3062
Dsui_3063: Dsui_3063 - transcription elongation factor GreA, at 3,277,667 to 3,278,143
_3063
Position (kb)
3276
3277 Strain fitness (log2 ratio)
-1
0
1 at 3275.971 kb on - strand at 3276.035 kb on + strand at 3276.040 kb on + strand at 3276.055 kb on - strand at 3276.114 kb on - strand, within Dsui_3060 at 3276.138 kb on - strand, within Dsui_3060 at 3276.138 kb on - strand, within Dsui_3060 at 3276.138 kb on - strand, within Dsui_3060 at 3276.171 kb on + strand, within Dsui_3060 at 3276.253 kb on + strand, within Dsui_3060 at 3276.253 kb on + strand at 3276.253 kb on + strand, within Dsui_3060 at 3276.261 kb on - strand, within Dsui_3060 at 3276.261 kb on - strand, within Dsui_3060 at 3276.261 kb on - strand, within Dsui_3060 at 3276.261 kb on - strand, within Dsui_3060 at 3276.265 kb on - strand, within Dsui_3060 at 3276.416 kb on - strand, within Dsui_3060 at 3276.467 kb on - strand, within Dsui_3060 at 3276.528 kb on + strand at 3276.563 kb on - strand, within Dsui_3060 at 3276.563 kb on - strand, within Dsui_3060 at 3276.565 kb on + strand at 3276.573 kb on - strand, within Dsui_3060 at 3276.573 kb on - strand, within Dsui_3060 at 3276.639 kb on - strand at 3276.795 kb on + strand, within Dsui_3061 at 3276.803 kb on - strand, within Dsui_3061 at 3276.852 kb on + strand, within Dsui_3061 at 3276.860 kb on - strand, within Dsui_3061 at 3277.056 kb on + strand at 3277.090 kb on - strand at 3277.161 kb on - strand, within Dsui_3062 at 3277.161 kb on - strand, within Dsui_3062 at 3277.166 kb on + strand, within Dsui_3062 at 3277.174 kb on - strand, within Dsui_3062 at 3277.190 kb on + strand, within Dsui_3062 at 3277.370 kb on - strand, within Dsui_3062 at 3277.440 kb on + strand, within Dsui_3062 at 3277.443 kb on - strand, within Dsui_3062 at 3277.479 kb on - strand, within Dsui_3062 at 3277.519 kb on - strand, within Dsui_3062 at 3277.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 3,275,971 - +0.1 3,276,035 + +1.3 3,276,040 + -1.3 3,276,055 - +0.1 3,276,114 - Dsui_3060 0.12 +1.3 3,276,138 - Dsui_3060 0.16 +0.0 3,276,138 - Dsui_3060 0.16 -0.6 3,276,138 - Dsui_3060 0.16 -0.6 3,276,171 + Dsui_3060 0.21 +0.6 3,276,253 + Dsui_3060 0.34 -0.7 3,276,253 + -1.5 3,276,253 + Dsui_3060 0.34 +0.3 3,276,261 - Dsui_3060 0.35 -0.4 3,276,261 - Dsui_3060 0.35 -0.3 3,276,261 - Dsui_3060 0.35 -0.4 3,276,261 - Dsui_3060 0.35 -0.2 3,276,265 - Dsui_3060 0.36 -0.4 3,276,416 - Dsui_3060 0.60 -0.4 3,276,467 - Dsui_3060 0.68 -0.3 3,276,528 + -1.3 3,276,563 - Dsui_3060 0.83 -0.1 3,276,563 - Dsui_3060 0.83 +0.1 3,276,565 + +1.3 3,276,573 - Dsui_3060 0.85 -0.1 3,276,573 - Dsui_3060 0.85 +0.1 3,276,639 - -0.1 3,276,795 + Dsui_3061 0.25 -0.6 3,276,803 - Dsui_3061 0.27 -0.2 3,276,852 + Dsui_3061 0.41 -1.1 3,276,860 - Dsui_3061 0.43 -0.0 3,277,056 + -0.0 3,277,090 - +0.3 3,277,161 - Dsui_3062 0.17 -0.1 3,277,161 - Dsui_3062 0.17 -0.3 3,277,166 + Dsui_3062 0.18 +0.2 3,277,174 - Dsui_3062 0.19 -0.1 3,277,190 + Dsui_3062 0.23 +0.0 3,277,370 - Dsui_3062 0.59 +0.1 3,277,440 + Dsui_3062 0.73 -0.4 3,277,443 - Dsui_3062 0.74 +0.2 3,277,479 - Dsui_3062 0.81 +0.4 3,277,519 - Dsui_3062 0.89 -0.3 3,277,661 - +0.4
Or see this region's nucleotide sequence