Strain Fitness in Dechlorosoma suillum PS around Dsui_3054

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3053 and Dsui_3054 are separated by 69 nucleotidesDsui_3054 and Dsui_3055 are separated by 2 nucleotides Dsui_3053: Dsui_3053 - phosphate ABC transporter, ATP-binding protein, at 3,267,714 to 3,268,490 _3053 Dsui_3054: Dsui_3054 - phosphate ABC transporter, permease protein PstA, at 3,268,560 to 3,269,498 _3054 Dsui_3055: Dsui_3055 - phosphate ABC transporter, permease protein PstC, at 3,269,501 to 3,270,475 _3055 Position (kb) 3268 3269 3270Strain fitness (log2 ratio) -1 0 1at 3267.561 kb on - strandat 3267.610 kb on - strandat 3267.621 kb on + strandat 3268.515 kb on + strandat 3268.523 kb on - strandat 3268.543 kb on - strandat 3268.543 kb on - strandat 3268.625 kb on - strandat 3268.726 kb on - strand, within Dsui_3054at 3268.896 kb on - strand, within Dsui_3054at 3269.035 kb on - strand, within Dsui_3054at 3269.538 kb on + strandat 3270.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,267,561 - -0.6
3,267,610 - -0.8
3,267,621 + -1.7
3,268,515 + +0.7
3,268,523 - +0.1
3,268,543 - +0.3
3,268,543 - -0.1
3,268,625 - -1.2
3,268,726 - Dsui_3054 0.18 -1.3
3,268,896 - Dsui_3054 0.36 +0.8
3,269,035 - Dsui_3054 0.51 -1.6
3,269,538 + +0.1
3,270,483 - +0.1

Or see this region's nucleotide sequence