Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2828 and Dsui_2829 are separated by 162 nucleotides Dsui_2829 and Dsui_2830 overlap by 4 nucleotides Dsui_2830 and Dsui_2831 are separated by 27 nucleotides
Dsui_2828: Dsui_2828 - hypothetical protein, at 3,005,060 to 3,006,079
_2828
Dsui_2829: Dsui_2829 - hypothetical protein, at 3,006,242 to 3,006,568
_2829
Dsui_2830: Dsui_2830 - adenine specific DNA methylase Mod, at 3,006,565 to 3,007,731
_2830
Dsui_2831: Dsui_2831 - hypothetical protein, at 3,007,759 to 3,008,490
_2831
Position (kb)
3006
3007
3008 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3005.572 kb on + strand, within Dsui_2828 at 3005.636 kb on + strand, within Dsui_2828 at 3005.644 kb on - strand at 3005.644 kb on - strand, within Dsui_2828 at 3005.665 kb on + strand, within Dsui_2828 at 3005.724 kb on - strand at 3005.764 kb on + strand, within Dsui_2828 at 3005.825 kb on - strand, within Dsui_2828 at 3005.851 kb on + strand, within Dsui_2828 at 3005.862 kb on + strand, within Dsui_2828 at 3005.971 kb on - strand, within Dsui_2828 at 3005.978 kb on - strand at 3005.978 kb on - strand at 3005.982 kb on + strand at 3005.990 kb on - strand at 3005.990 kb on - strand at 3005.992 kb on + strand at 3005.992 kb on + strand at 3005.992 kb on + strand at 3006.212 kb on + strand at 3006.305 kb on + strand, within Dsui_2829 at 3006.310 kb on + strand, within Dsui_2829 at 3006.310 kb on + strand, within Dsui_2829 at 3006.310 kb on + strand, within Dsui_2829 at 3006.322 kb on + strand, within Dsui_2829 at 3006.322 kb on + strand, within Dsui_2829 at 3006.322 kb on + strand, within Dsui_2829 at 3006.328 kb on + strand, within Dsui_2829 at 3006.436 kb on + strand, within Dsui_2829 at 3006.479 kb on + strand, within Dsui_2829 at 3006.498 kb on + strand, within Dsui_2829 at 3006.547 kb on + strand at 3006.548 kb on + strand at 3007.648 kb on + strand at 3007.648 kb on + strand at 3007.653 kb on - strand at 3007.671 kb on + strand at 3007.671 kb on + strand at 3007.671 kb on + strand at 3007.699 kb on + strand at 3007.699 kb on + strand at 3007.699 kb on + strand at 3007.699 kb on + strand at 3007.710 kb on + strand at 3007.771 kb on + strand at 3007.853 kb on + strand, within Dsui_2831 at 3007.872 kb on + strand, within Dsui_2831 at 3007.903 kb on - strand, within Dsui_2831 at 3007.954 kb on - strand, within Dsui_2831 at 3007.966 kb on + strand, within Dsui_2831 at 3007.980 kb on + strand, within Dsui_2831 at 3007.989 kb on + strand, within Dsui_2831 at 3007.989 kb on + strand, within Dsui_2831 at 3007.989 kb on + strand, within Dsui_2831 at 3007.996 kb on + strand, within Dsui_2831 at 3007.997 kb on - strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.051 kb on + strand, within Dsui_2831 at 3008.059 kb on - strand, within Dsui_2831 at 3008.059 kb on - strand, within Dsui_2831 at 3008.068 kb on - strand, within Dsui_2831 at 3008.068 kb on - strand, within Dsui_2831 at 3008.068 kb on - strand, within Dsui_2831 at 3008.073 kb on - strand, within Dsui_2831 at 3008.091 kb on + strand, within Dsui_2831 at 3008.099 kb on - strand, within Dsui_2831 at 3008.099 kb on - strand, within Dsui_2831 at 3008.099 kb on - strand, within Dsui_2831 at 3008.099 kb on - strand, within Dsui_2831 at 3008.108 kb on + strand, within Dsui_2831 at 3008.108 kb on + strand, within Dsui_2831 at 3008.108 kb on + strand, within Dsui_2831 at 3008.108 kb on + strand, within Dsui_2831 at 3008.108 kb on + strand, within Dsui_2831 at 3008.108 kb on + strand, within Dsui_2831 at 3008.110 kb on + strand, within Dsui_2831 at 3008.116 kb on - strand, within Dsui_2831 at 3008.116 kb on - strand, within Dsui_2831 at 3008.116 kb on - strand at 3008.116 kb on - strand, within Dsui_2831 at 3008.116 kb on - strand, within Dsui_2831 at 3008.116 kb on - strand, within Dsui_2831 at 3008.116 kb on - strand, within Dsui_2831 at 3008.116 kb on - strand, within Dsui_2831 at 3008.116 kb on - strand at 3008.116 kb on - strand, within Dsui_2831 at 3008.116 kb on - strand, within Dsui_2831 at 3008.116 kb on - strand, within Dsui_2831 at 3008.132 kb on + strand, within Dsui_2831 at 3008.132 kb on + strand, within Dsui_2831 at 3008.140 kb on - strand, within Dsui_2831 at 3008.159 kb on - strand, within Dsui_2831 at 3008.176 kb on + strand, within Dsui_2831 at 3008.186 kb on + strand, within Dsui_2831 at 3008.186 kb on + strand, within Dsui_2831 at 3008.194 kb on - strand, within Dsui_2831 at 3008.249 kb on + strand, within Dsui_2831 at 3008.249 kb on + strand, within Dsui_2831 at 3008.249 kb on + strand, within Dsui_2831 at 3008.249 kb on + strand, within Dsui_2831 at 3008.249 kb on + strand, within Dsui_2831 at 3008.249 kb on + strand, within Dsui_2831 at 3008.250 kb on - strand, within Dsui_2831 at 3008.257 kb on - strand, within Dsui_2831 at 3008.269 kb on + strand, within Dsui_2831 at 3008.269 kb on + strand, within Dsui_2831 at 3008.277 kb on - strand, within Dsui_2831 at 3008.372 kb on + strand, within Dsui_2831 at 3008.380 kb on - strand, within Dsui_2831 at 3008.382 kb on + strand, within Dsui_2831 at 3008.382 kb on + strand, within Dsui_2831 at 3008.385 kb on - strand, within Dsui_2831 at 3008.387 kb on + strand, within Dsui_2831 at 3008.392 kb on + strand, within Dsui_2831 at 3008.392 kb on + strand, within Dsui_2831 at 3008.395 kb on - strand, within Dsui_2831 at 3008.400 kb on - strand, within Dsui_2831 at 3008.400 kb on - strand, within Dsui_2831 at 3008.422 kb on + strand at 3008.424 kb on - strand at 3008.427 kb on + strand at 3008.427 kb on + strand at 3008.432 kb on + strand at 3008.432 kb on + strand at 3008.435 kb on - strand at 3008.437 kb on + strand at 3008.437 kb on + strand at 3008.445 kb on - strand at 3008.453 kb on - strand at 3008.471 kb on - strand at 3008.471 kb on - strand at 3008.552 kb on + strand at 3008.552 kb on + strand at 3008.562 kb on - strand at 3008.562 kb on - strand at 3008.571 kb on + strand at 3008.572 kb on - strand at 3008.579 kb on - strand at 3008.589 kb on - strand at 3008.604 kb on - strand at 3008.620 kb on + strand at 3008.670 kb on + strand at 3008.697 kb on + strand at 3008.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 3,005,572 + Dsui_2828 0.50 -0.4 3,005,636 + Dsui_2828 0.56 -2.9 3,005,644 - -0.6 3,005,644 - Dsui_2828 0.57 -0.1 3,005,665 + Dsui_2828 0.59 -2.0 3,005,724 - +2.0 3,005,764 + Dsui_2828 0.69 -2.0 3,005,825 - Dsui_2828 0.75 -1.7 3,005,851 + Dsui_2828 0.78 -0.7 3,005,862 + Dsui_2828 0.79 -1.5 3,005,971 - Dsui_2828 0.89 -0.4 3,005,978 - -0.6 3,005,978 - -0.5 3,005,982 + -1.3 3,005,990 - -0.2 3,005,990 - +0.1 3,005,992 + -1.2 3,005,992 + -0.7 3,005,992 + +1.8 3,006,212 + +0.0 3,006,305 + Dsui_2829 0.19 -0.4 3,006,310 + Dsui_2829 0.21 +0.9 3,006,310 + Dsui_2829 0.21 -0.2 3,006,310 + Dsui_2829 0.21 -0.0 3,006,322 + Dsui_2829 0.24 -0.1 3,006,322 + Dsui_2829 0.24 +0.0 3,006,322 + Dsui_2829 0.24 -0.6 3,006,328 + Dsui_2829 0.26 +0.1 3,006,436 + Dsui_2829 0.59 +0.4 3,006,479 + Dsui_2829 0.72 -0.3 3,006,498 + Dsui_2829 0.78 +0.4 3,006,547 + -0.2 3,006,548 + +0.1 3,007,648 + +0.2 3,007,648 + +0.1 3,007,653 - +0.6 3,007,671 + -1.1 3,007,671 + -0.2 3,007,671 + +0.1 3,007,699 + -0.3 3,007,699 + -0.2 3,007,699 + +2.2 3,007,699 + +0.1 3,007,710 + +0.6 3,007,771 + +0.1 3,007,853 + Dsui_2831 0.13 +0.0 3,007,872 + Dsui_2831 0.15 +0.5 3,007,903 - Dsui_2831 0.20 -0.6 3,007,954 - Dsui_2831 0.27 -0.6 3,007,966 + Dsui_2831 0.28 +0.2 3,007,980 + Dsui_2831 0.30 -0.3 3,007,989 + Dsui_2831 0.31 -0.1 3,007,989 + Dsui_2831 0.31 -0.0 3,007,989 + Dsui_2831 0.31 -0.5 3,007,996 + Dsui_2831 0.32 +0.1 3,007,997 - Dsui_2831 0.33 +0.2 3,008,051 + Dsui_2831 0.40 +0.0 3,008,051 + Dsui_2831 0.40 +0.0 3,008,051 + Dsui_2831 0.40 +0.1 3,008,051 + Dsui_2831 0.40 -1.6 3,008,051 + Dsui_2831 0.40 +0.2 3,008,051 + Dsui_2831 0.40 -0.0 3,008,051 + Dsui_2831 0.40 +0.0 3,008,051 + Dsui_2831 0.40 -0.2 3,008,051 + Dsui_2831 0.40 +0.5 3,008,051 + Dsui_2831 0.40 +0.0 3,008,051 + Dsui_2831 0.40 -0.1 3,008,059 - Dsui_2831 0.41 -2.2 3,008,059 - Dsui_2831 0.41 -1.2 3,008,068 - Dsui_2831 0.42 -1.7 3,008,068 - Dsui_2831 0.42 -0.1 3,008,068 - Dsui_2831 0.42 -2.5 3,008,073 - Dsui_2831 0.43 -1.7 3,008,091 + Dsui_2831 0.45 +0.3 3,008,099 - Dsui_2831 0.46 -1.7 3,008,099 - Dsui_2831 0.46 +0.3 3,008,099 - Dsui_2831 0.46 -0.4 3,008,099 - Dsui_2831 0.46 +0.3 3,008,108 + Dsui_2831 0.48 -0.1 3,008,108 + Dsui_2831 0.48 -0.4 3,008,108 + Dsui_2831 0.48 +0.5 3,008,108 + Dsui_2831 0.48 +0.2 3,008,108 + Dsui_2831 0.48 +0.2 3,008,108 + Dsui_2831 0.48 +0.2 3,008,110 + Dsui_2831 0.48 +0.2 3,008,116 - Dsui_2831 0.49 -0.1 3,008,116 - Dsui_2831 0.49 -0.4 3,008,116 - +1.2 3,008,116 - Dsui_2831 0.49 +0.7 3,008,116 - Dsui_2831 0.49 -1.5 3,008,116 - Dsui_2831 0.49 +0.0 3,008,116 - Dsui_2831 0.49 -0.1 3,008,116 - Dsui_2831 0.49 -0.7 3,008,116 - +3.0 3,008,116 - Dsui_2831 0.49 -0.6 3,008,116 - Dsui_2831 0.49 -0.3 3,008,116 - Dsui_2831 0.49 +1.1 3,008,132 + Dsui_2831 0.51 -0.1 3,008,132 + Dsui_2831 0.51 +0.5 3,008,140 - Dsui_2831 0.52 -0.4 3,008,159 - Dsui_2831 0.55 +1.3 3,008,176 + Dsui_2831 0.57 -0.4 3,008,186 + Dsui_2831 0.58 -0.0 3,008,186 + Dsui_2831 0.58 -0.1 3,008,194 - Dsui_2831 0.59 +0.5 3,008,249 + Dsui_2831 0.67 +0.1 3,008,249 + Dsui_2831 0.67 +0.2 3,008,249 + Dsui_2831 0.67 +0.2 3,008,249 + Dsui_2831 0.67 -0.1 3,008,249 + Dsui_2831 0.67 +0.1 3,008,249 + Dsui_2831 0.67 +0.1 3,008,250 - Dsui_2831 0.67 -0.7 3,008,257 - Dsui_2831 0.68 -1.4 3,008,269 + Dsui_2831 0.70 +0.1 3,008,269 + Dsui_2831 0.70 +0.1 3,008,277 - Dsui_2831 0.71 -0.3 3,008,372 + Dsui_2831 0.84 -0.1 3,008,380 - Dsui_2831 0.85 -0.1 3,008,382 + Dsui_2831 0.85 +0.1 3,008,382 + Dsui_2831 0.85 +0.5 3,008,385 - Dsui_2831 0.86 -1.4 3,008,387 + Dsui_2831 0.86 -0.0 3,008,392 + Dsui_2831 0.86 -0.2 3,008,392 + Dsui_2831 0.86 +0.1 3,008,395 - Dsui_2831 0.87 -0.4 3,008,400 - Dsui_2831 0.88 +0.1 3,008,400 - Dsui_2831 0.88 -1.7 3,008,422 + +0.2 3,008,424 - -1.3 3,008,427 + -0.1 3,008,427 + +0.2 3,008,432 + +0.3 3,008,432 + +0.3 3,008,435 - -0.9 3,008,437 + -0.3 3,008,437 + +0.3 3,008,445 - -0.0 3,008,453 - +1.7 3,008,471 - -1.2 3,008,471 - +0.8 3,008,552 + +0.2 3,008,552 + -0.1 3,008,562 - +1.8 3,008,562 - -0.3 3,008,571 + +0.3 3,008,572 - -0.2 3,008,579 - -0.3 3,008,589 - -1.0 3,008,604 - -0.2 3,008,620 + +0.2 3,008,670 + -0.1 3,008,697 + -0.1 3,008,710 - -0.6
Or see this region's nucleotide sequence