Strain Fitness in Dechlorosoma suillum PS around Dsui_2828

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2825 and Dsui_2826 are separated by 33 nucleotidesDsui_2826 and Dsui_2827 are separated by 204 nucleotidesDsui_2827 and Dsui_2828 are separated by 59 nucleotidesDsui_2828 and Dsui_2829 are separated by 162 nucleotidesDsui_2829 and Dsui_2830 overlap by 4 nucleotides Dsui_2825: Dsui_2825 - hypothetical protein, at 3,001,095 to 3,004,202 _2825 Dsui_2826: Dsui_2826 - hypothetical protein, at 3,004,236 to 3,004,346 _2826 Dsui_2827: Dsui_2827 - hypothetical protein, at 3,004,551 to 3,005,000 _2827 Dsui_2828: Dsui_2828 - hypothetical protein, at 3,005,060 to 3,006,079 _2828 Dsui_2829: Dsui_2829 - hypothetical protein, at 3,006,242 to 3,006,568 _2829 Dsui_2830: Dsui_2830 - adenine specific DNA methylase Mod, at 3,006,565 to 3,007,731 _2830 Position (kb) 3005 3006 3007Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3004.102 kb on - strandat 3004.131 kb on + strandat 3004.200 kb on - strandat 3004.284 kb on - strand, within Dsui_2826at 3004.346 kb on + strandat 3004.354 kb on - strandat 3004.427 kb on + strandat 3004.427 kb on + strandat 3004.435 kb on - strandat 3004.504 kb on - strandat 3004.577 kb on - strandat 3004.591 kb on + strandat 3004.610 kb on + strand, within Dsui_2827at 3004.645 kb on + strand, within Dsui_2827at 3004.645 kb on + strand, within Dsui_2827at 3004.669 kb on - strand, within Dsui_2827at 3004.693 kb on + strand, within Dsui_2827at 3004.721 kb on - strand, within Dsui_2827at 3004.740 kb on - strand, within Dsui_2827at 3004.897 kb on + strand, within Dsui_2827at 3004.903 kb on + strand, within Dsui_2827at 3004.905 kb on + strand, within Dsui_2827at 3004.915 kb on - strand, within Dsui_2827at 3004.971 kb on + strandat 3005.051 kb on + strandat 3005.111 kb on + strandat 3005.129 kb on - strandat 3005.196 kb on - strand, within Dsui_2828at 3005.248 kb on - strand, within Dsui_2828at 3005.280 kb on + strand, within Dsui_2828at 3005.297 kb on + strandat 3005.472 kb on + strand, within Dsui_2828at 3005.572 kb on + strand, within Dsui_2828at 3005.636 kb on + strand, within Dsui_2828at 3005.644 kb on - strandat 3005.644 kb on - strand, within Dsui_2828at 3005.665 kb on + strand, within Dsui_2828at 3005.724 kb on - strandat 3005.764 kb on + strand, within Dsui_2828at 3005.825 kb on - strand, within Dsui_2828at 3005.851 kb on + strand, within Dsui_2828at 3005.862 kb on + strand, within Dsui_2828at 3005.971 kb on - strand, within Dsui_2828at 3005.978 kb on - strandat 3005.978 kb on - strandat 3005.982 kb on + strandat 3005.990 kb on - strandat 3005.990 kb on - strandat 3005.992 kb on + strandat 3005.992 kb on + strandat 3005.992 kb on + strandat 3006.212 kb on + strandat 3006.305 kb on + strand, within Dsui_2829at 3006.310 kb on + strand, within Dsui_2829at 3006.310 kb on + strand, within Dsui_2829at 3006.310 kb on + strand, within Dsui_2829at 3006.322 kb on + strand, within Dsui_2829at 3006.322 kb on + strand, within Dsui_2829at 3006.322 kb on + strand, within Dsui_2829at 3006.328 kb on + strand, within Dsui_2829at 3006.436 kb on + strand, within Dsui_2829at 3006.479 kb on + strand, within Dsui_2829at 3006.498 kb on + strand, within Dsui_2829at 3006.547 kb on + strandat 3006.548 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,004,102 - -0.0
3,004,131 + +0.2
3,004,200 - -0.4
3,004,284 - Dsui_2826 0.43 -2.3
3,004,346 + -0.2
3,004,354 - -0.5
3,004,427 + +0.3
3,004,427 + +0.1
3,004,435 - +0.3
3,004,504 - +0.0
3,004,577 - +0.2
3,004,591 + -0.2
3,004,610 + Dsui_2827 0.13 +0.2
3,004,645 + Dsui_2827 0.21 +0.9
3,004,645 + Dsui_2827 0.21 +0.4
3,004,669 - Dsui_2827 0.26 -2.2
3,004,693 + Dsui_2827 0.32 -0.6
3,004,721 - Dsui_2827 0.38 -0.9
3,004,740 - Dsui_2827 0.42 -0.2
3,004,897 + Dsui_2827 0.77 -0.7
3,004,903 + Dsui_2827 0.78 -0.4
3,004,905 + Dsui_2827 0.79 -0.4
3,004,915 - Dsui_2827 0.81 -1.4
3,004,971 + -1.0
3,005,051 + -0.2
3,005,111 + -0.5
3,005,129 - +0.7
3,005,196 - Dsui_2828 0.13 -1.0
3,005,248 - Dsui_2828 0.18 -0.4
3,005,280 + Dsui_2828 0.22 -1.0
3,005,297 + +0.1
3,005,472 + Dsui_2828 0.40 -0.6
3,005,572 + Dsui_2828 0.50 -0.4
3,005,636 + Dsui_2828 0.56 -2.9
3,005,644 - -0.6
3,005,644 - Dsui_2828 0.57 -0.1
3,005,665 + Dsui_2828 0.59 -2.0
3,005,724 - +2.0
3,005,764 + Dsui_2828 0.69 -2.0
3,005,825 - Dsui_2828 0.75 -1.7
3,005,851 + Dsui_2828 0.78 -0.7
3,005,862 + Dsui_2828 0.79 -1.5
3,005,971 - Dsui_2828 0.89 -0.4
3,005,978 - -0.6
3,005,978 - -0.5
3,005,982 + -1.3
3,005,990 - -0.2
3,005,990 - +0.1
3,005,992 + -1.2
3,005,992 + -0.7
3,005,992 + +1.8
3,006,212 + +0.0
3,006,305 + Dsui_2829 0.19 -0.4
3,006,310 + Dsui_2829 0.21 +0.9
3,006,310 + Dsui_2829 0.21 -0.2
3,006,310 + Dsui_2829 0.21 -0.0
3,006,322 + Dsui_2829 0.24 -0.1
3,006,322 + Dsui_2829 0.24 +0.0
3,006,322 + Dsui_2829 0.24 -0.6
3,006,328 + Dsui_2829 0.26 +0.1
3,006,436 + Dsui_2829 0.59 +0.4
3,006,479 + Dsui_2829 0.72 -0.3
3,006,498 + Dsui_2829 0.78 +0.4
3,006,547 + -0.2
3,006,548 + +0.1

Or see this region's nucleotide sequence