Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2813 and Dsui_2814 are separated by 231 nucleotides Dsui_2814 and Dsui_2815 are separated by 256 nucleotides Dsui_2815 and Dsui_2816 are separated by 110 nucleotides
Dsui_2813: Dsui_2813 - exopolyphosphatase, at 2,986,688 to 2,988,223
_2813
Dsui_2814: Dsui_2814 - polyphosphate kinase 1, at 2,988,455 to 2,990,563
_2814
Dsui_2815: Dsui_2815 - putative flavoprotein, at 2,990,820 to 2,991,386
_2815
Dsui_2816: Dsui_2816 - (p)ppGpp synthetase, RelA/SpoT family, at 2,991,497 to 2,993,719
_2816
Position (kb)
2988
2989
2990
2991 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2987.730 kb on - strand, within Dsui_2813 at 2987.732 kb on + strand, within Dsui_2813 at 2987.828 kb on + strand at 2987.833 kb on - strand, within Dsui_2813 at 2987.923 kb on - strand, within Dsui_2813 at 2987.923 kb on - strand, within Dsui_2813 at 2987.925 kb on + strand, within Dsui_2813 at 2987.952 kb on - strand, within Dsui_2813 at 2988.102 kb on - strand at 2988.135 kb on + strand at 2988.162 kb on - strand at 2988.196 kb on - strand at 2988.263 kb on - strand at 2988.431 kb on + strand at 2988.431 kb on + strand at 2988.431 kb on + strand at 2988.439 kb on - strand at 2988.439 kb on - strand at 2988.439 kb on - strand at 2988.510 kb on + strand at 2988.598 kb on + strand at 2988.788 kb on - strand, within Dsui_2814 at 2988.908 kb on + strand, within Dsui_2814 at 2988.927 kb on - strand at 2989.078 kb on + strand, within Dsui_2814 at 2989.106 kb on - strand, within Dsui_2814 at 2989.145 kb on + strand, within Dsui_2814 at 2989.145 kb on - strand, within Dsui_2814 at 2989.378 kb on + strand, within Dsui_2814 at 2989.458 kb on - strand at 2989.609 kb on - strand, within Dsui_2814 at 2989.660 kb on + strand, within Dsui_2814 at 2989.662 kb on + strand, within Dsui_2814 at 2989.675 kb on - strand, within Dsui_2814 at 2989.890 kb on + strand, within Dsui_2814 at 2989.897 kb on + strand, within Dsui_2814 at 2989.905 kb on - strand, within Dsui_2814 at 2989.921 kb on - strand, within Dsui_2814 at 2989.987 kb on + strand, within Dsui_2814 at 2989.994 kb on + strand, within Dsui_2814 at 2989.995 kb on - strand, within Dsui_2814 at 2990.018 kb on + strand, within Dsui_2814 at 2990.019 kb on + strand, within Dsui_2814 at 2990.071 kb on + strand, within Dsui_2814 at 2990.071 kb on + strand, within Dsui_2814 at 2990.071 kb on + strand, within Dsui_2814 at 2990.079 kb on - strand, within Dsui_2814 at 2990.197 kb on - strand, within Dsui_2814 at 2990.428 kb on - strand at 2990.436 kb on - strand at 2990.512 kb on + strand at 2990.697 kb on + strand at 2990.747 kb on + strand at 2990.747 kb on + strand at 2990.755 kb on - strand at 2990.755 kb on - strand at 2990.798 kb on - strand at 2990.853 kb on - strand at 2990.871 kb on - strand at 2990.916 kb on + strand, within Dsui_2815 at 2991.015 kb on + strand, within Dsui_2815 at 2991.118 kb on + strand, within Dsui_2815 at 2991.219 kb on + strand, within Dsui_2815 at 2991.227 kb on - strand, within Dsui_2815 at 2991.262 kb on - strand, within Dsui_2815 at 2991.296 kb on + strand, within Dsui_2815 at 2991.363 kb on + strand at 2991.388 kb on - strand at 2991.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,987,730 - Dsui_2813 0.68 +0.3 2,987,732 + Dsui_2813 0.68 -0.4 2,987,828 + +2.0 2,987,833 - Dsui_2813 0.75 +0.2 2,987,923 - Dsui_2813 0.80 -3.4 2,987,923 - Dsui_2813 0.80 +0.6 2,987,925 + Dsui_2813 0.81 -0.1 2,987,952 - Dsui_2813 0.82 +0.5 2,988,102 - +0.6 2,988,135 + -0.1 2,988,162 - +0.5 2,988,196 - -0.5 2,988,263 - +0.3 2,988,431 + +0.1 2,988,431 + +0.2 2,988,431 + +0.5 2,988,439 - +0.5 2,988,439 - -0.5 2,988,439 - -0.1 2,988,510 + -1.4 2,988,598 + +0.9 2,988,788 - Dsui_2814 0.16 -1.0 2,988,908 + Dsui_2814 0.21 -0.7 2,988,927 - -0.9 2,989,078 + Dsui_2814 0.30 -0.3 2,989,106 - Dsui_2814 0.31 -1.1 2,989,145 + Dsui_2814 0.33 +0.2 2,989,145 - Dsui_2814 0.33 -0.3 2,989,378 + Dsui_2814 0.44 +0.2 2,989,458 - +0.9 2,989,609 - Dsui_2814 0.55 -1.8 2,989,660 + Dsui_2814 0.57 +0.1 2,989,662 + Dsui_2814 0.57 -0.5 2,989,675 - Dsui_2814 0.58 -0.3 2,989,890 + Dsui_2814 0.68 -0.1 2,989,897 + Dsui_2814 0.68 +0.1 2,989,905 - Dsui_2814 0.69 +0.5 2,989,921 - Dsui_2814 0.70 -1.1 2,989,987 + Dsui_2814 0.73 -2.4 2,989,994 + Dsui_2814 0.73 +0.1 2,989,995 - Dsui_2814 0.73 -0.5 2,990,018 + Dsui_2814 0.74 +0.6 2,990,019 + Dsui_2814 0.74 -0.4 2,990,071 + Dsui_2814 0.77 +0.3 2,990,071 + Dsui_2814 0.77 +0.3 2,990,071 + Dsui_2814 0.77 +0.3 2,990,079 - Dsui_2814 0.77 -1.5 2,990,197 - Dsui_2814 0.83 -0.7 2,990,428 - -0.4 2,990,436 - +0.2 2,990,512 + +0.1 2,990,697 + -0.5 2,990,747 + +0.1 2,990,747 + -0.1 2,990,755 - +0.5 2,990,755 - +0.6 2,990,798 - -0.9 2,990,853 - +0.2 2,990,871 - -1.0 2,990,916 + Dsui_2815 0.17 +0.6 2,991,015 + Dsui_2815 0.34 +0.6 2,991,118 + Dsui_2815 0.53 +0.3 2,991,219 + Dsui_2815 0.70 +0.1 2,991,227 - Dsui_2815 0.72 -1.0 2,991,262 - Dsui_2815 0.78 -0.2 2,991,296 + Dsui_2815 0.84 +0.8 2,991,363 + -0.3 2,991,388 - +0.2 2,991,468 - +0.1
Or see this region's nucleotide sequence