Strain Fitness in Dechlorosoma suillum PS around Dsui_2548

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2547 and Dsui_2548 are separated by 58 nucleotidesDsui_2548 and Dsui_2549 are separated by 40 nucleotidesDsui_2549 and Dsui_2550 are separated by 134 nucleotides Dsui_2547: Dsui_2547 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,699,350 to 2,702,019 _2547 Dsui_2548: Dsui_2548 - hypothetical protein, at 2,702,078 to 2,702,518 _2548 Dsui_2549: Dsui_2549 - hypothetical protein, at 2,702,559 to 2,702,996 _2549 Dsui_2550: Dsui_2550 - Protein of unknown function (DUF2726), at 2,703,131 to 2,703,694 _2550 Position (kb) 2702 2703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2701.254 kb on + strand, within Dsui_2547at 2701.358 kb on + strand, within Dsui_2547at 2701.372 kb on - strand, within Dsui_2547at 2701.415 kb on + strand, within Dsui_2547at 2701.476 kb on + strand, within Dsui_2547at 2701.489 kb on - strand, within Dsui_2547at 2701.553 kb on + strand, within Dsui_2547at 2701.553 kb on + strand, within Dsui_2547at 2701.561 kb on - strand, within Dsui_2547at 2701.561 kb on - strand, within Dsui_2547at 2701.657 kb on + strand, within Dsui_2547at 2701.687 kb on + strand, within Dsui_2547at 2701.758 kb on + strandat 2701.758 kb on + strandat 2701.766 kb on - strandat 2701.778 kb on - strandat 2701.901 kb on + strandat 2701.927 kb on + strandat 2701.935 kb on - strandat 2702.076 kb on - strandat 2702.206 kb on - strand, within Dsui_2548at 2702.225 kb on - strand, within Dsui_2548at 2702.252 kb on + strand, within Dsui_2548at 2702.387 kb on + strand, within Dsui_2548at 2702.445 kb on - strand, within Dsui_2548at 2702.646 kb on + strand, within Dsui_2549at 2702.749 kb on + strand, within Dsui_2549at 2702.803 kb on - strand, within Dsui_2549at 2702.804 kb on - strand, within Dsui_2549at 2702.830 kb on + strand, within Dsui_2549at 2702.830 kb on + strandat 2702.830 kb on + strand, within Dsui_2549at 2702.835 kb on - strand, within Dsui_2549at 2702.838 kb on - strand, within Dsui_2549at 2702.838 kb on - strand, within Dsui_2549at 2702.838 kb on - strand, within Dsui_2549at 2702.838 kb on - strand, within Dsui_2549at 2702.882 kb on - strand, within Dsui_2549at 2702.915 kb on + strand, within Dsui_2549at 2702.979 kb on + strandat 2703.100 kb on + strandat 2703.100 kb on - strandat 2703.104 kb on + strandat 2703.104 kb on + strandat 2703.104 kb on + strandat 2703.122 kb on - strandat 2703.158 kb on - strandat 2703.203 kb on - strand, within Dsui_2550at 2703.222 kb on + strand, within Dsui_2550at 2703.222 kb on + strand, within Dsui_2550at 2703.230 kb on - strand, within Dsui_2550at 2703.240 kb on + strandat 2703.248 kb on - strand, within Dsui_2550at 2703.248 kb on - strand, within Dsui_2550at 2703.294 kb on - strand, within Dsui_2550at 2703.294 kb on - strand, within Dsui_2550at 2703.313 kb on + strand, within Dsui_2550at 2703.325 kb on + strandat 2703.325 kb on + strandat 2703.328 kb on - strand, within Dsui_2550at 2703.328 kb on - strand, within Dsui_2550at 2703.335 kb on + strand, within Dsui_2550at 2703.338 kb on - strand, within Dsui_2550at 2703.340 kb on + strand, within Dsui_2550at 2703.343 kb on - strand, within Dsui_2550at 2703.343 kb on - strand, within Dsui_2550at 2703.348 kb on + strandat 2703.348 kb on - strand, within Dsui_2550at 2703.399 kb on + strandat 2703.407 kb on - strand, within Dsui_2550at 2703.455 kb on - strand, within Dsui_2550at 2703.455 kb on - strand, within Dsui_2550at 2703.465 kb on - strand, within Dsui_2550at 2703.465 kb on - strand, within Dsui_2550at 2703.465 kb on - strand, within Dsui_2550

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,701,254 + Dsui_2547 0.71 -0.1
2,701,358 + Dsui_2547 0.75 +0.8
2,701,372 - Dsui_2547 0.76 +0.3
2,701,415 + Dsui_2547 0.77 +1.0
2,701,476 + Dsui_2547 0.80 +0.7
2,701,489 - Dsui_2547 0.80 +0.5
2,701,553 + Dsui_2547 0.83 +0.5
2,701,553 + Dsui_2547 0.83 +0.5
2,701,561 - Dsui_2547 0.83 +0.4
2,701,561 - Dsui_2547 0.83 +0.6
2,701,657 + Dsui_2547 0.86 +0.9
2,701,687 + Dsui_2547 0.88 +0.5
2,701,758 + +0.7
2,701,758 + +0.1
2,701,766 - +1.3
2,701,778 - -0.3
2,701,901 + +0.9
2,701,927 + +0.8
2,701,935 - +0.8
2,702,076 - -2.0
2,702,206 - Dsui_2548 0.29 +0.5
2,702,225 - Dsui_2548 0.33 +0.4
2,702,252 + Dsui_2548 0.39 +0.4
2,702,387 + Dsui_2548 0.70 +0.2
2,702,445 - Dsui_2548 0.83 +0.0
2,702,646 + Dsui_2549 0.20 +0.0
2,702,749 + Dsui_2549 0.43 -0.5
2,702,803 - Dsui_2549 0.56 -0.8
2,702,804 - Dsui_2549 0.56 -0.7
2,702,830 + Dsui_2549 0.62 -0.2
2,702,830 + -0.4
2,702,830 + Dsui_2549 0.62 -1.2
2,702,835 - Dsui_2549 0.63 -1.0
2,702,838 - Dsui_2549 0.64 -0.3
2,702,838 - Dsui_2549 0.64 -0.1
2,702,838 - Dsui_2549 0.64 -0.4
2,702,838 - Dsui_2549 0.64 -0.4
2,702,882 - Dsui_2549 0.74 +0.5
2,702,915 + Dsui_2549 0.81 -1.0
2,702,979 + -0.3
2,703,100 + -4.1
2,703,100 - -0.2
2,703,104 + +0.1
2,703,104 + -1.0
2,703,104 + -0.1
2,703,122 - -1.1
2,703,158 - +0.0
2,703,203 - Dsui_2550 0.13 -1.5
2,703,222 + Dsui_2550 0.16 +0.6
2,703,222 + Dsui_2550 0.16 -1.4
2,703,230 - Dsui_2550 0.18 -0.4
2,703,240 + -0.4
2,703,248 - Dsui_2550 0.21 -0.1
2,703,248 - Dsui_2550 0.21 -1.8
2,703,294 - Dsui_2550 0.29 +1.1
2,703,294 - Dsui_2550 0.29 -1.7
2,703,313 + Dsui_2550 0.32 -1.0
2,703,325 + +1.3
2,703,325 + -0.7
2,703,328 - Dsui_2550 0.35 -0.0
2,703,328 - Dsui_2550 0.35 +0.3
2,703,335 + Dsui_2550 0.36 -1.6
2,703,338 - Dsui_2550 0.37 -2.3
2,703,340 + Dsui_2550 0.37 -0.3
2,703,343 - Dsui_2550 0.38 -0.2
2,703,343 - Dsui_2550 0.38 -0.5
2,703,348 + +0.6
2,703,348 - Dsui_2550 0.38 +0.2
2,703,399 + -1.0
2,703,407 - Dsui_2550 0.49 +0.4
2,703,455 - Dsui_2550 0.57 +0.0
2,703,455 - Dsui_2550 0.57 -0.3
2,703,465 - Dsui_2550 0.59 -0.4
2,703,465 - Dsui_2550 0.59 -0.2
2,703,465 - Dsui_2550 0.59 -0.4

Or see this region's nucleotide sequence