Strain Fitness in Dechlorosoma suillum PS around Dsui_2393

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2391 and Dsui_2392 are separated by 2 nucleotidesDsui_2392 and Dsui_2393 overlap by 4 nucleotidesDsui_2393 and Dsui_2394 are separated by 3 nucleotides Dsui_2391: Dsui_2391 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 2,543,525 to 2,544,013 _2391 Dsui_2392: Dsui_2392 - 2''-5'' RNA ligase, at 2,544,016 to 2,544,591 _2392 Dsui_2393: Dsui_2393 - uncharacterized domain HDIG-containing protein, at 2,544,588 to 2,545,811 _2393 Dsui_2394: Dsui_2394 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,545,815 to 2,548,775 _2394 Position (kb) 2544 2545 2546Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2544.017 kb on + strandat 2544.162 kb on - strandat 2544.192 kb on + strand, within Dsui_2392at 2544.221 kb on - strandat 2544.255 kb on - strandat 2544.255 kb on - strandat 2544.315 kb on + strand, within Dsui_2392at 2544.524 kb on + strand, within Dsui_2392at 2544.574 kb on + strandat 2544.776 kb on - strandat 2544.896 kb on + strand, within Dsui_2393at 2545.080 kb on + strand, within Dsui_2393at 2545.309 kb on + strand, within Dsui_2393at 2545.312 kb on + strand, within Dsui_2393at 2545.444 kb on - strandat 2545.653 kb on + strand, within Dsui_2393at 2545.871 kb on - strandat 2545.927 kb on + strandat 2545.970 kb on - strandat 2545.970 kb on - strandat 2545.974 kb on - strandat 2546.012 kb on + strandat 2546.098 kb on + strandat 2546.105 kb on + strandat 2546.438 kb on + strand, within Dsui_2394at 2546.463 kb on + strand, within Dsui_2394at 2546.533 kb on - strandat 2546.548 kb on + strand, within Dsui_2394

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,544,017 + +0.0
2,544,162 - -0.1
2,544,192 + Dsui_2392 0.31 +0.4
2,544,221 - +1.5
2,544,255 - +1.9
2,544,255 - +1.5
2,544,315 + Dsui_2392 0.52 -0.6
2,544,524 + Dsui_2392 0.88 +0.1
2,544,574 + -1.0
2,544,776 - -0.8
2,544,896 + Dsui_2393 0.25 +0.2
2,545,080 + Dsui_2393 0.40 -5.7
2,545,309 + Dsui_2393 0.59 +0.4
2,545,312 + Dsui_2393 0.59 +0.1
2,545,444 - +1.5
2,545,653 + Dsui_2393 0.87 -0.2
2,545,871 - -0.3
2,545,927 + +0.4
2,545,970 - +0.3
2,545,970 - -0.1
2,545,974 - -0.5
2,546,012 + +0.2
2,546,098 + +0.5
2,546,105 + +0.2
2,546,438 + Dsui_2394 0.21 +0.8
2,546,463 + Dsui_2394 0.22 +0.2
2,546,533 - -0.5
2,546,548 + Dsui_2394 0.25 +0.7

Or see this region's nucleotide sequence