Strain Fitness in Dechlorosoma suillum PS around Dsui_2319

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2317 and Dsui_2318 are separated by 79 nucleotidesDsui_2318 and Dsui_2319 are separated by 173 nucleotidesDsui_2319 and Dsui_2320 are separated by 164 nucleotides Dsui_2317: Dsui_2317 - phosphopyruvate hydratase, at 2,471,841 to 2,473,124 _2317 Dsui_2318: Dsui_2318 - septum formation initiator, at 2,473,204 to 2,473,542 _2318 Dsui_2319: Dsui_2319 - transcriptional regulator, at 2,473,716 to 2,474,675 _2319 Dsui_2320: Dsui_2320 - Protein of unknown function (DUF2863), at 2,474,840 to 2,476,018 _2320 Position (kb) 2473 2474 2475Strain fitness (log2 ratio) -1 0 1 2 3at 2473.580 kb on + strandat 2473.657 kb on + strandat 2473.733 kb on + strandat 2473.805 kb on + strandat 2473.894 kb on + strand, within Dsui_2319at 2473.894 kb on + strand, within Dsui_2319at 2473.900 kb on + strand, within Dsui_2319at 2473.939 kb on - strandat 2473.975 kb on - strand, within Dsui_2319at 2474.018 kb on - strand, within Dsui_2319at 2474.052 kb on - strand, within Dsui_2319at 2474.113 kb on - strandat 2474.113 kb on - strand, within Dsui_2319at 2474.207 kb on + strand, within Dsui_2319at 2474.287 kb on + strand, within Dsui_2319at 2474.296 kb on + strand, within Dsui_2319at 2474.310 kb on - strand, within Dsui_2319at 2474.355 kb on + strand, within Dsui_2319at 2474.380 kb on + strand, within Dsui_2319at 2474.411 kb on - strand, within Dsui_2319at 2474.424 kb on + strand, within Dsui_2319at 2474.432 kb on - strand, within Dsui_2319at 2474.467 kb on + strand, within Dsui_2319at 2474.501 kb on - strandat 2474.511 kb on + strand, within Dsui_2319at 2474.613 kb on + strandat 2474.752 kb on - strandat 2474.767 kb on + strandat 2474.788 kb on - strandat 2474.969 kb on - strand, within Dsui_2320at 2475.103 kb on - strand, within Dsui_2320at 2475.220 kb on + strand, within Dsui_2320at 2475.376 kb on + strand, within Dsui_2320at 2475.532 kb on + strandat 2475.598 kb on + strandat 2475.631 kb on + strand, within Dsui_2320

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
2,473,580 + +0.8
2,473,657 + +3.1
2,473,733 + +0.0
2,473,805 + +0.3
2,473,894 + Dsui_2319 0.19 +0.6
2,473,894 + Dsui_2319 0.19 -0.2
2,473,900 + Dsui_2319 0.19 +0.3
2,473,939 - +1.9
2,473,975 - Dsui_2319 0.27 -0.0
2,474,018 - Dsui_2319 0.31 +0.9
2,474,052 - Dsui_2319 0.35 +1.3
2,474,113 - +1.1
2,474,113 - Dsui_2319 0.41 +1.3
2,474,207 + Dsui_2319 0.51 +0.1
2,474,287 + Dsui_2319 0.59 -0.0
2,474,296 + Dsui_2319 0.60 +0.4
2,474,310 - Dsui_2319 0.62 +0.5
2,474,355 + Dsui_2319 0.67 +0.8
2,474,380 + Dsui_2319 0.69 +0.7
2,474,411 - Dsui_2319 0.72 +1.2
2,474,424 + Dsui_2319 0.74 +0.4
2,474,432 - Dsui_2319 0.75 +0.1
2,474,467 + Dsui_2319 0.78 +0.3
2,474,501 - +1.2
2,474,511 + Dsui_2319 0.83 +0.4
2,474,613 + -0.6
2,474,752 - -1.0
2,474,767 + +0.5
2,474,788 - -0.2
2,474,969 - Dsui_2320 0.11 -0.1
2,475,103 - Dsui_2320 0.22 -0.5
2,475,220 + Dsui_2320 0.32 +0.3
2,475,376 + Dsui_2320 0.45 -0.0
2,475,532 + +1.5
2,475,598 + -0.3
2,475,631 + Dsui_2320 0.67 -0.5

Or see this region's nucleotide sequence