Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2198 and Dsui_2199 are separated by 161 nucleotides Dsui_2199 and Dsui_2200 are separated by 28 nucleotides Dsui_2200 and Dsui_2201 are separated by 25 nucleotides Dsui_2201 and Dsui_2202 are separated by 68 nucleotides Dsui_2202 and Dsui_2203 are separated by 94 nucleotides
Dsui_2198: Dsui_2198 - ATP-dependent protease La, at 2,334,072 to 2,336,489
_2198
Dsui_2199: Dsui_2199 - bacterial nucleoid DNA-binding protein, at 2,336,651 to 2,336,923
_2199
Dsui_2200: Dsui_2200 - tRNA-Val, at 2,336,952 to 2,337,027
_2200
Dsui_2201: Dsui_2201 - tRNA-Asp, at 2,337,053 to 2,337,129
_2201
Dsui_2202: Dsui_2202 - parvulin-like peptidyl-prolyl isomerase, at 2,337,198 to 2,339,090
_2202
Dsui_2203: Dsui_2203 - enoyl-(acyl-carrier-protein) reductase (NADH), at 2,339,185 to 2,339,982
_2203
Position (kb)
2337
2338
2339
2340 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2336.285 kb on - strand at 2336.305 kb on - strand at 2336.607 kb on + strand at 2336.630 kb on + strand at 2336.637 kb on - strand at 2336.772 kb on + strand, within Dsui_2199 at 2336.900 kb on + strand at 2337.048 kb on + strand at 2337.351 kb on - strand at 2337.365 kb on + strand at 2337.365 kb on + strand at 2337.365 kb on + strand at 2337.397 kb on - strand, within Dsui_2202 at 2337.397 kb on - strand at 2337.397 kb on - strand, within Dsui_2202 at 2337.400 kb on + strand, within Dsui_2202 at 2337.416 kb on - strand at 2337.575 kb on + strand, within Dsui_2202 at 2337.616 kb on - strand, within Dsui_2202 at 2337.803 kb on + strand, within Dsui_2202 at 2337.804 kb on + strand, within Dsui_2202 at 2337.809 kb on + strand, within Dsui_2202 at 2337.811 kb on - strand, within Dsui_2202 at 2337.812 kb on - strand, within Dsui_2202 at 2337.817 kb on - strand at 2337.822 kb on - strand, within Dsui_2202 at 2337.896 kb on + strand, within Dsui_2202 at 2338.051 kb on - strand at 2338.055 kb on + strand, within Dsui_2202 at 2338.077 kb on + strand, within Dsui_2202 at 2338.078 kb on - strand, within Dsui_2202 at 2338.175 kb on + strand, within Dsui_2202 at 2338.217 kb on + strand, within Dsui_2202 at 2338.224 kb on + strand, within Dsui_2202 at 2338.306 kb on + strand, within Dsui_2202 at 2338.410 kb on - strand, within Dsui_2202 at 2338.498 kb on + strand, within Dsui_2202 at 2338.562 kb on + strand, within Dsui_2202 at 2338.594 kb on + strand, within Dsui_2202 at 2338.597 kb on + strand, within Dsui_2202 at 2338.612 kb on + strand, within Dsui_2202 at 2338.636 kb on + strand, within Dsui_2202 at 2338.644 kb on - strand, within Dsui_2202 at 2338.701 kb on + strand, within Dsui_2202 at 2338.765 kb on + strand, within Dsui_2202 at 2338.889 kb on - strand, within Dsui_2202 at 2338.918 kb on - strand at 2339.011 kb on + strand at 2339.054 kb on + strand at 2339.062 kb on - strand at 2339.062 kb on - strand at 2339.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,336,285 - +2.7 2,336,305 - +2.8 2,336,607 + -0.5 2,336,630 + -3.1 2,336,637 - -0.2 2,336,772 + Dsui_2199 0.44 -1.3 2,336,900 + -0.4 2,337,048 + -0.9 2,337,351 - -1.1 2,337,365 + -0.2 2,337,365 + -1.1 2,337,365 + -0.2 2,337,397 - Dsui_2202 0.11 -0.1 2,337,397 - +0.9 2,337,397 - Dsui_2202 0.11 -0.8 2,337,400 + Dsui_2202 0.11 -1.2 2,337,416 - -0.1 2,337,575 + Dsui_2202 0.20 +0.4 2,337,616 - Dsui_2202 0.22 -0.5 2,337,803 + Dsui_2202 0.32 -0.5 2,337,804 + Dsui_2202 0.32 -0.5 2,337,809 + Dsui_2202 0.32 -0.6 2,337,811 - Dsui_2202 0.32 -1.5 2,337,812 - Dsui_2202 0.32 -1.3 2,337,817 - +0.2 2,337,822 - Dsui_2202 0.33 -0.1 2,337,896 + Dsui_2202 0.37 +0.5 2,338,051 - -0.5 2,338,055 + Dsui_2202 0.45 +0.2 2,338,077 + Dsui_2202 0.46 -0.9 2,338,078 - Dsui_2202 0.46 -0.8 2,338,175 + Dsui_2202 0.52 -1.3 2,338,217 + Dsui_2202 0.54 -0.0 2,338,224 + Dsui_2202 0.54 -1.3 2,338,306 + Dsui_2202 0.59 -0.1 2,338,410 - Dsui_2202 0.64 +0.2 2,338,498 + Dsui_2202 0.69 -0.4 2,338,562 + Dsui_2202 0.72 -0.2 2,338,594 + Dsui_2202 0.74 -0.9 2,338,597 + Dsui_2202 0.74 -0.4 2,338,612 + Dsui_2202 0.75 +0.0 2,338,636 + Dsui_2202 0.76 -0.3 2,338,644 - Dsui_2202 0.76 -2.3 2,338,701 + Dsui_2202 0.79 +0.2 2,338,765 + Dsui_2202 0.83 -0.6 2,338,889 - Dsui_2202 0.89 +0.0 2,338,918 - -0.5 2,339,011 + +0.1 2,339,054 + +0.1 2,339,062 - -0.5 2,339,062 - +0.3 2,339,169 + +0.6
Or see this region's nucleotide sequence