Strain Fitness in Dechlorosoma suillum PS around Dsui_2202

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2198 and Dsui_2199 are separated by 161 nucleotidesDsui_2199 and Dsui_2200 are separated by 28 nucleotidesDsui_2200 and Dsui_2201 are separated by 25 nucleotidesDsui_2201 and Dsui_2202 are separated by 68 nucleotidesDsui_2202 and Dsui_2203 are separated by 94 nucleotides Dsui_2198: Dsui_2198 - ATP-dependent protease La, at 2,334,072 to 2,336,489 _2198 Dsui_2199: Dsui_2199 - bacterial nucleoid DNA-binding protein, at 2,336,651 to 2,336,923 _2199 Dsui_2200: Dsui_2200 - tRNA-Val, at 2,336,952 to 2,337,027 _2200 Dsui_2201: Dsui_2201 - tRNA-Asp, at 2,337,053 to 2,337,129 _2201 Dsui_2202: Dsui_2202 - parvulin-like peptidyl-prolyl isomerase, at 2,337,198 to 2,339,090 _2202 Dsui_2203: Dsui_2203 - enoyl-(acyl-carrier-protein) reductase (NADH), at 2,339,185 to 2,339,982 _2203 Position (kb) 2337 2338 2339 2340Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2336.285 kb on - strandat 2336.305 kb on - strandat 2336.607 kb on + strandat 2336.630 kb on + strandat 2336.637 kb on - strandat 2336.772 kb on + strand, within Dsui_2199at 2336.900 kb on + strandat 2337.048 kb on + strandat 2337.351 kb on - strandat 2337.365 kb on + strandat 2337.365 kb on + strandat 2337.365 kb on + strandat 2337.397 kb on - strand, within Dsui_2202at 2337.397 kb on - strandat 2337.397 kb on - strand, within Dsui_2202at 2337.400 kb on + strand, within Dsui_2202at 2337.416 kb on - strandat 2337.575 kb on + strand, within Dsui_2202at 2337.616 kb on - strand, within Dsui_2202at 2337.803 kb on + strand, within Dsui_2202at 2337.804 kb on + strand, within Dsui_2202at 2337.809 kb on + strand, within Dsui_2202at 2337.811 kb on - strand, within Dsui_2202at 2337.812 kb on - strand, within Dsui_2202at 2337.817 kb on - strandat 2337.822 kb on - strand, within Dsui_2202at 2337.896 kb on + strand, within Dsui_2202at 2338.051 kb on - strandat 2338.055 kb on + strand, within Dsui_2202at 2338.077 kb on + strand, within Dsui_2202at 2338.078 kb on - strand, within Dsui_2202at 2338.175 kb on + strand, within Dsui_2202at 2338.217 kb on + strand, within Dsui_2202at 2338.224 kb on + strand, within Dsui_2202at 2338.306 kb on + strand, within Dsui_2202at 2338.410 kb on - strand, within Dsui_2202at 2338.498 kb on + strand, within Dsui_2202at 2338.562 kb on + strand, within Dsui_2202at 2338.594 kb on + strand, within Dsui_2202at 2338.597 kb on + strand, within Dsui_2202at 2338.612 kb on + strand, within Dsui_2202at 2338.636 kb on + strand, within Dsui_2202at 2338.644 kb on - strand, within Dsui_2202at 2338.701 kb on + strand, within Dsui_2202at 2338.765 kb on + strand, within Dsui_2202at 2338.889 kb on - strand, within Dsui_2202at 2338.918 kb on - strandat 2339.011 kb on + strandat 2339.054 kb on + strandat 2339.062 kb on - strandat 2339.062 kb on - strandat 2339.169 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,336,285 - +2.7
2,336,305 - +2.8
2,336,607 + -0.5
2,336,630 + -3.1
2,336,637 - -0.2
2,336,772 + Dsui_2199 0.44 -1.3
2,336,900 + -0.4
2,337,048 + -0.9
2,337,351 - -1.1
2,337,365 + -0.2
2,337,365 + -1.1
2,337,365 + -0.2
2,337,397 - Dsui_2202 0.11 -0.1
2,337,397 - +0.9
2,337,397 - Dsui_2202 0.11 -0.8
2,337,400 + Dsui_2202 0.11 -1.2
2,337,416 - -0.1
2,337,575 + Dsui_2202 0.20 +0.4
2,337,616 - Dsui_2202 0.22 -0.5
2,337,803 + Dsui_2202 0.32 -0.5
2,337,804 + Dsui_2202 0.32 -0.5
2,337,809 + Dsui_2202 0.32 -0.6
2,337,811 - Dsui_2202 0.32 -1.5
2,337,812 - Dsui_2202 0.32 -1.3
2,337,817 - +0.2
2,337,822 - Dsui_2202 0.33 -0.1
2,337,896 + Dsui_2202 0.37 +0.5
2,338,051 - -0.5
2,338,055 + Dsui_2202 0.45 +0.2
2,338,077 + Dsui_2202 0.46 -0.9
2,338,078 - Dsui_2202 0.46 -0.8
2,338,175 + Dsui_2202 0.52 -1.3
2,338,217 + Dsui_2202 0.54 -0.0
2,338,224 + Dsui_2202 0.54 -1.3
2,338,306 + Dsui_2202 0.59 -0.1
2,338,410 - Dsui_2202 0.64 +0.2
2,338,498 + Dsui_2202 0.69 -0.4
2,338,562 + Dsui_2202 0.72 -0.2
2,338,594 + Dsui_2202 0.74 -0.9
2,338,597 + Dsui_2202 0.74 -0.4
2,338,612 + Dsui_2202 0.75 +0.0
2,338,636 + Dsui_2202 0.76 -0.3
2,338,644 - Dsui_2202 0.76 -2.3
2,338,701 + Dsui_2202 0.79 +0.2
2,338,765 + Dsui_2202 0.83 -0.6
2,338,889 - Dsui_2202 0.89 +0.0
2,338,918 - -0.5
2,339,011 + +0.1
2,339,054 + +0.1
2,339,062 - -0.5
2,339,062 - +0.3
2,339,169 + +0.6

Or see this region's nucleotide sequence