Strain Fitness in Dechlorosoma suillum PS around Dsui_2193

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2191 and Dsui_2192 overlap by 16 nucleotidesDsui_2192 and Dsui_2193 are separated by 10 nucleotidesDsui_2193 and Dsui_2194 are separated by 131 nucleotidesDsui_2194 and Dsui_2195 are separated by 46 nucleotides Dsui_2191: Dsui_2191 - squalene-associated FAD-dependent desaturase, at 2,327,343 to 2,328,680 _2191 Dsui_2192: Dsui_2192 - squalene synthase HpnD, at 2,328,665 to 2,329,498 _2192 Dsui_2193: Dsui_2193 - squalene synthase HpnC, at 2,329,509 to 2,330,333 _2193 Dsui_2194: Dsui_2194 - tRNA-Leu, at 2,330,465 to 2,330,549 _2194 Dsui_2195: Dsui_2195 - trigger factor, at 2,330,596 to 2,331,900 _2195 Position (kb) 2329 2330 2331Strain fitness (log2 ratio) -2 -1 0 1 2at 2328.519 kb on - strand, within Dsui_2191at 2328.519 kb on - strandat 2328.728 kb on - strandat 2328.742 kb on + strandat 2328.772 kb on + strandat 2328.797 kb on - strand, within Dsui_2192at 2328.797 kb on - strand, within Dsui_2192at 2328.853 kb on - strand, within Dsui_2192at 2328.861 kb on + strandat 2329.108 kb on - strand, within Dsui_2192at 2329.116 kb on - strand, within Dsui_2192at 2329.123 kb on + strand, within Dsui_2192at 2329.131 kb on - strand, within Dsui_2192at 2329.177 kb on + strandat 2329.186 kb on - strand, within Dsui_2192at 2329.248 kb on + strand, within Dsui_2192at 2329.255 kb on - strand, within Dsui_2192at 2329.276 kb on - strand, within Dsui_2192at 2329.292 kb on - strand, within Dsui_2192at 2329.406 kb on - strand, within Dsui_2192at 2329.600 kb on + strandat 2329.753 kb on + strand, within Dsui_2193at 2329.761 kb on - strand, within Dsui_2193at 2329.761 kb on - strand, within Dsui_2193at 2329.761 kb on - strand, within Dsui_2193at 2329.780 kb on - strand, within Dsui_2193at 2329.780 kb on - strand, within Dsui_2193at 2329.780 kb on - strand, within Dsui_2193at 2329.780 kb on - strand, within Dsui_2193at 2329.856 kb on + strandat 2329.859 kb on - strand, within Dsui_2193at 2329.859 kb on - strand, within Dsui_2193at 2329.927 kb on - strand, within Dsui_2193at 2329.990 kb on + strandat 2330.013 kb on - strand, within Dsui_2193at 2330.209 kb on - strand, within Dsui_2193at 2330.213 kb on - strand, within Dsui_2193at 2330.266 kb on - strandat 2330.337 kb on - strandat 2330.368 kb on + strandat 2330.423 kb on + strandat 2330.423 kb on - strandat 2330.430 kb on - strandat 2330.673 kb on + strandat 2330.743 kb on + strand, within Dsui_2195at 2330.755 kb on + strand, within Dsui_2195at 2330.763 kb on + strand, within Dsui_2195at 2330.803 kb on + strand, within Dsui_2195at 2330.836 kb on + strand, within Dsui_2195at 2330.883 kb on + strand, within Dsui_2195at 2330.918 kb on + strand, within Dsui_2195at 2331.069 kb on + strand, within Dsui_2195at 2331.152 kb on + strand, within Dsui_2195at 2331.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,328,519 - Dsui_2191 0.88 +0.4
2,328,519 - +0.5
2,328,728 - +0.9
2,328,742 + -1.0
2,328,772 + -0.1
2,328,797 - Dsui_2192 0.16 -0.2
2,328,797 - Dsui_2192 0.16 -0.1
2,328,853 - Dsui_2192 0.23 -0.3
2,328,861 + -1.1
2,329,108 - Dsui_2192 0.53 -0.1
2,329,116 - Dsui_2192 0.54 -1.0
2,329,123 + Dsui_2192 0.55 -1.7
2,329,131 - Dsui_2192 0.56 -0.2
2,329,177 + -0.5
2,329,186 - Dsui_2192 0.62 -1.2
2,329,248 + Dsui_2192 0.70 -0.6
2,329,255 - Dsui_2192 0.71 +1.5
2,329,276 - Dsui_2192 0.73 -1.2
2,329,292 - Dsui_2192 0.75 -0.9
2,329,406 - Dsui_2192 0.89 -1.6
2,329,600 + +1.8
2,329,753 + Dsui_2193 0.30 -2.2
2,329,761 - Dsui_2193 0.31 +0.0
2,329,761 - Dsui_2193 0.31 -0.6
2,329,761 - Dsui_2193 0.31 +0.0
2,329,780 - Dsui_2193 0.33 -2.0
2,329,780 - Dsui_2193 0.33 +0.9
2,329,780 - Dsui_2193 0.33 +0.7
2,329,780 - Dsui_2193 0.33 +1.1
2,329,856 + +1.5
2,329,859 - Dsui_2193 0.42 +0.5
2,329,859 - Dsui_2193 0.42 +0.1
2,329,927 - Dsui_2193 0.51 -0.2
2,329,990 + +1.5
2,330,013 - Dsui_2193 0.61 -0.4
2,330,209 - Dsui_2193 0.85 +0.3
2,330,213 - Dsui_2193 0.85 -0.2
2,330,266 - -0.9
2,330,337 - +0.2
2,330,368 + +0.2
2,330,423 + +0.4
2,330,423 - -0.0
2,330,430 - -0.1
2,330,673 + +1.5
2,330,743 + Dsui_2195 0.11 +1.2
2,330,755 + Dsui_2195 0.12 +0.9
2,330,763 + Dsui_2195 0.13 +0.6
2,330,803 + Dsui_2195 0.16 +1.3
2,330,836 + Dsui_2195 0.18 +0.6
2,330,883 + Dsui_2195 0.22 +0.6
2,330,918 + Dsui_2195 0.25 +0.5
2,331,069 + Dsui_2195 0.36 +1.1
2,331,152 + Dsui_2195 0.43 +2.2
2,331,275 - +2.5

Or see this region's nucleotide sequence