Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2191 and Dsui_2192 overlap by 16 nucleotides Dsui_2192 and Dsui_2193 are separated by 10 nucleotides Dsui_2193 and Dsui_2194 are separated by 131 nucleotides Dsui_2194 and Dsui_2195 are separated by 46 nucleotides
Dsui_2191: Dsui_2191 - squalene-associated FAD-dependent desaturase, at 2,327,343 to 2,328,680
_2191
Dsui_2192: Dsui_2192 - squalene synthase HpnD, at 2,328,665 to 2,329,498
_2192
Dsui_2193: Dsui_2193 - squalene synthase HpnC, at 2,329,509 to 2,330,333
_2193
Dsui_2194: Dsui_2194 - tRNA-Leu, at 2,330,465 to 2,330,549
_2194
Dsui_2195: Dsui_2195 - trigger factor, at 2,330,596 to 2,331,900
_2195
Position (kb)
2329
2330
2331 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2328.519 kb on - strand, within Dsui_2191 at 2328.519 kb on - strand at 2328.728 kb on - strand at 2328.742 kb on + strand at 2328.772 kb on + strand at 2328.797 kb on - strand, within Dsui_2192 at 2328.797 kb on - strand, within Dsui_2192 at 2328.853 kb on - strand, within Dsui_2192 at 2328.861 kb on + strand at 2329.108 kb on - strand, within Dsui_2192 at 2329.116 kb on - strand, within Dsui_2192 at 2329.123 kb on + strand, within Dsui_2192 at 2329.131 kb on - strand, within Dsui_2192 at 2329.177 kb on + strand at 2329.186 kb on - strand, within Dsui_2192 at 2329.248 kb on + strand, within Dsui_2192 at 2329.255 kb on - strand, within Dsui_2192 at 2329.276 kb on - strand, within Dsui_2192 at 2329.292 kb on - strand, within Dsui_2192 at 2329.406 kb on - strand, within Dsui_2192 at 2329.600 kb on + strand at 2329.753 kb on + strand, within Dsui_2193 at 2329.761 kb on - strand, within Dsui_2193 at 2329.761 kb on - strand, within Dsui_2193 at 2329.761 kb on - strand, within Dsui_2193 at 2329.780 kb on - strand, within Dsui_2193 at 2329.780 kb on - strand, within Dsui_2193 at 2329.780 kb on - strand, within Dsui_2193 at 2329.780 kb on - strand, within Dsui_2193 at 2329.856 kb on + strand at 2329.859 kb on - strand, within Dsui_2193 at 2329.859 kb on - strand, within Dsui_2193 at 2329.927 kb on - strand, within Dsui_2193 at 2329.990 kb on + strand at 2330.013 kb on - strand, within Dsui_2193 at 2330.209 kb on - strand, within Dsui_2193 at 2330.213 kb on - strand, within Dsui_2193 at 2330.266 kb on - strand at 2330.337 kb on - strand at 2330.368 kb on + strand at 2330.423 kb on + strand at 2330.423 kb on - strand at 2330.430 kb on - strand at 2330.673 kb on + strand at 2330.743 kb on + strand, within Dsui_2195 at 2330.755 kb on + strand, within Dsui_2195 at 2330.763 kb on + strand, within Dsui_2195 at 2330.803 kb on + strand, within Dsui_2195 at 2330.836 kb on + strand, within Dsui_2195 at 2330.883 kb on + strand, within Dsui_2195 at 2330.918 kb on + strand, within Dsui_2195 at 2331.069 kb on + strand, within Dsui_2195 at 2331.152 kb on + strand, within Dsui_2195 at 2331.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,328,519 - Dsui_2191 0.88 +0.4 2,328,519 - +0.5 2,328,728 - +0.9 2,328,742 + -1.0 2,328,772 + -0.1 2,328,797 - Dsui_2192 0.16 -0.2 2,328,797 - Dsui_2192 0.16 -0.1 2,328,853 - Dsui_2192 0.23 -0.3 2,328,861 + -1.1 2,329,108 - Dsui_2192 0.53 -0.1 2,329,116 - Dsui_2192 0.54 -1.0 2,329,123 + Dsui_2192 0.55 -1.7 2,329,131 - Dsui_2192 0.56 -0.2 2,329,177 + -0.5 2,329,186 - Dsui_2192 0.62 -1.2 2,329,248 + Dsui_2192 0.70 -0.6 2,329,255 - Dsui_2192 0.71 +1.5 2,329,276 - Dsui_2192 0.73 -1.2 2,329,292 - Dsui_2192 0.75 -0.9 2,329,406 - Dsui_2192 0.89 -1.6 2,329,600 + +1.8 2,329,753 + Dsui_2193 0.30 -2.2 2,329,761 - Dsui_2193 0.31 +0.0 2,329,761 - Dsui_2193 0.31 -0.6 2,329,761 - Dsui_2193 0.31 +0.0 2,329,780 - Dsui_2193 0.33 -2.0 2,329,780 - Dsui_2193 0.33 +0.9 2,329,780 - Dsui_2193 0.33 +0.7 2,329,780 - Dsui_2193 0.33 +1.1 2,329,856 + +1.5 2,329,859 - Dsui_2193 0.42 +0.5 2,329,859 - Dsui_2193 0.42 +0.1 2,329,927 - Dsui_2193 0.51 -0.2 2,329,990 + +1.5 2,330,013 - Dsui_2193 0.61 -0.4 2,330,209 - Dsui_2193 0.85 +0.3 2,330,213 - Dsui_2193 0.85 -0.2 2,330,266 - -0.9 2,330,337 - +0.2 2,330,368 + +0.2 2,330,423 + +0.4 2,330,423 - -0.0 2,330,430 - -0.1 2,330,673 + +1.5 2,330,743 + Dsui_2195 0.11 +1.2 2,330,755 + Dsui_2195 0.12 +0.9 2,330,763 + Dsui_2195 0.13 +0.6 2,330,803 + Dsui_2195 0.16 +1.3 2,330,836 + Dsui_2195 0.18 +0.6 2,330,883 + Dsui_2195 0.22 +0.6 2,330,918 + Dsui_2195 0.25 +0.5 2,331,069 + Dsui_2195 0.36 +1.1 2,331,152 + Dsui_2195 0.43 +2.2 2,331,275 - +2.5
Or see this region's nucleotide sequence