Strain Fitness in Dechlorosoma suillum PS around Dsui_2183

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2182 and Dsui_2183 are separated by 240 nucleotidesDsui_2183 and Dsui_2184 are separated by 114 nucleotidesDsui_2184 and Dsui_2185 are separated by 71 nucleotides Dsui_2182: Dsui_2182 - arabinose efflux permease family protein, at 2,317,202 to 2,318,506 _2182 Dsui_2183: Dsui_2183 - aldose 1-epimerase-like enzyme, at 2,318,747 to 2,319,619 _2183 Dsui_2184: Dsui_2184 - hypothetical protein, at 2,319,734 to 2,320,282 _2184 Dsui_2185: Dsui_2185 - DNA-3-methyladenine glycosylase I, at 2,320,354 to 2,320,926 _2185 Position (kb) 2318 2319 2320Strain fitness (log2 ratio) -1 0 1 2at 2317.957 kb on - strandat 2318.032 kb on + strand, within Dsui_2182at 2318.042 kb on - strandat 2318.084 kb on - strandat 2318.156 kb on + strand, within Dsui_2182at 2318.284 kb on - strandat 2318.595 kb on + strandat 2318.605 kb on + strandat 2318.768 kb on + strandat 2318.823 kb on + strandat 2318.948 kb on + strandat 2319.343 kb on + strandat 2319.369 kb on - strand, within Dsui_2183at 2319.402 kb on - strand, within Dsui_2183at 2319.564 kb on - strandat 2319.874 kb on + strandat 2319.977 kb on + strand, within Dsui_2184at 2320.260 kb on - strandat 2320.299 kb on - strandat 2320.402 kb on + strandat 2320.425 kb on + strand, within Dsui_2185at 2320.477 kb on - strandat 2320.619 kb on - strand, within Dsui_2185

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,317,957 - +1.5
2,318,032 + Dsui_2182 0.64 -0.1
2,318,042 - -0.1
2,318,084 - +0.5
2,318,156 + Dsui_2182 0.73 +0.7
2,318,284 - -0.5
2,318,595 + +0.0
2,318,605 + +0.3
2,318,768 + -0.5
2,318,823 + +1.5
2,318,948 + +1.1
2,319,343 + +0.5
2,319,369 - Dsui_2183 0.71 +0.1
2,319,402 - Dsui_2183 0.75 +0.6
2,319,564 - +1.3
2,319,874 + +0.5
2,319,977 + Dsui_2184 0.44 +0.0
2,320,260 - +0.6
2,320,299 - -0.6
2,320,402 + +2.1
2,320,425 + Dsui_2185 0.12 -0.5
2,320,477 - +2.1
2,320,619 - Dsui_2185 0.46 -1.4

Or see this region's nucleotide sequence